Gene detail

Detailed information of FUN_003846-T2 in Acropora pulchra

Genomic Location: ntLink_8:16003740...16015908
NR annotation: XP_029197551.2, YTH domain-containing protein 1-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_003846-T2

ATGGCAGAGGAAGGAGAACTTTCATCGCCCGATGAATTGGAAACAAGCAATGATGGTGTTGAGCTGAACGTCCTTGATAACATTCTTGGTGAACAAGTCAACGATGAGTTTGCCGATGAACTTGATACTGCCACAGTGAAAGCAAGTGCACCCAGCAGAAAGCGAAAGATAAGTACAGATGTCAGGAGTGTTTCACCCAAAAAGAAGAACATAGAAAAGGCTTCAAGTCCAAAAATTCAATCAAAAGAAAAGACAGCTACAAGTGGACAGTACTCAAAGAACTCAAACCAGGCTCCAAGCAAACCAAAGAGTGCAAAGACAAGCGATGTAGAGATCACCAGCACGGTAGCTGAAGAGGAAAAGGAGAAAGAAGAACAACATAGCAGAGATGGAAGTAAAGAAAGCAAAGTTAAAAGTAAAGACAAAGAGAAAGGTTCTAGTTTGAGTGAGAGTGCAAGTAAGGAAAAAGACAAGGAGAAGGAAACACGGAGGAACAAGCAGAAGGAGACAAAAACAGTTGACAATGAGACAGAGAGAAAGACTGTGGAGAAGATGTCAAAGAAAAAACAAGAGCAGACTTCAGAGGATAGTGGAATGAAAGAGGCTGTGGACAAGAAGAAAGAATCTGTGAAGAAACTTGGTAGTGCTTCCAAAAAGACTGTTAATCTCAAAAGGAAAGAACCTGTTAAAGTTGTTAAGAAAGAGGTGAAAAAGGATGTTTCTTCAAAGAATGATGCTGTAAAGAAGGAAGTGAAGAAGGAGGTTGTCAAGAAAAGTCCTGTAGCCAGCAAAGGGCAAGTAAAGGCAAAAGTTGTAGTAGAAGAGAAGAAGAAGGCCACAGGACAACCAGTTAAAAAAGTGGCAAAGACCACGGAGCACAGTACTCGCACTGAGGCTAAAACTAGCGACACAACAGCAGAGGCAGAAGTCAGCACTGTTAGGGCTAAAGAGATGCCTTGTCAAGATGTTGAAGAAGATTCAGTGAAAAGCCAACCAGCTGAAAAAAAACTTGAGAAAAAGAGTGTGAGAAAGATCAGTGGAAAGGAGAGCAAGAAAACTGGCAAAACTGAAAGCAAGCAAGTAACAGTAGTGGCAAGACAGCGTAAAGTACAGAAGGTCAAAGAGACTGCTGCTGAATCAAAGGAGAAAACTAAGGAAAAAGCAGTCAAAAAAGATGATGTCGTGGAGTCAGTCATAGAAAATGAAGTTTCTCACTCAAGAGAAACGGAAGCAGCAAGCAAAGATAATGGTGCTGAGGATGAAGACATGGAAGTGATTGATGATTTAGAGGAGGGGAGTCTTGGGGGAAGTACTGCTGCAAGTGGAGACATAGATTTCAGTGAAGAAGAAGAAGAAGAGGATGATGATGATGAGCCGTCAGGGTCTGTCACACCATCATCTTCAGTGTCATCCAAAACAGAATCAGAAATTGCAAGCGATGACGATGAGAAAGAGGACGAAGAACCTAGAGAAAGGAGACCGAAACGGAAAGCTTCATCGGCTACTGAAGAACAGCAATCCAGTGCGGAGAGCGATAACTCGGATTCAACGGAAAGTGTTCATGTTAAGAGTAAAGTGGCAAAAGCATCAAAGCAGAAAATTAATATGGATGAGTTCTTTGAGGAAGCGCGATACTTCGTTATGAAGAGCAATAATCACGAGAATGTTGCGCTGTCAAAGGCAAAGGGTGTGTGGTCAACACCAAAAGCGAATGAGAAGAAACTCAATGTTTCCTTCAAGAGATACAAGAATGTTATCTTGATATTCTCTGTCAAAGAGAGCGGGAAATTTCAAGGTTTTGCGCGGCTGGCATCCGAGGCAAAGCACGGGGGTCCAATGATCCCCTGGGTACTCCCACCGGGGATGAGTGCCAAGGCTCTGGGAGGAGTGTTTAAACTGGAATGGCTCAACAGGAGGGAGCTGTGGTTTAGCAAGTGTCTGCATTTAAGGAACCCATGGAATGAGAACAAAGAGGTGAAGATATGCCGCGATGGACAGGAAGTAGAGCCTGCAGTTGGTGAAGCTCTTTGTCGCCTTTTCCCAGAGGACGAGACAGTTGACATTAGCTCATCGCACCAGGCATCAGAACGACGCCACAGGAAGGATAGGGAATCATCTAGGCGTCATGCGAGACATTCCGACGATTTGCGCAAATTGAAAAGAAAGCGGCGAGGTAAAGAGTGGCTCTTTGTTGTCCTTGCTGTGCAGACAAGCTGCCTGGATAGCAATGATACTGATCTAAAGAATACTGCAACTTAA

Transcript

FUN_003846-T2

TAGTACCCATTGCCCAGGTGAATTGTTGTCCGATGGAGATCTGGAAACAGATATTCCATAATAATTTCCAACACGAGGAAGGAAGCAAGAGCTTTGAAAATTCTCGTTCTACTTGTGGCCGTATTTTGCGGACAAATAAAGACAGCTTCGTCAATTTTAGTTATTCTTAGATGGCAGAGGAAGGAGAACTTTCATCGCCCGATGAATTGGAAACAAGCAATGATGGTGTTGAGCTGAACGTCCTTGATAACATTCTTGGTGAACAAGTCAACGATGAGTTTGCCGATGAACTTGATACTGCCACAGTGAAAGCAAGTGCACCCAGCAGAAAGCGAAAGATAAGTACAGATGTCAGGAGTGTTTCACCCAAAAAGAAGAACATAGAAAAGGCTTCAAGTCCAAAAATTCAATCAAAAGAAAAGACAGCTACAAGTGGACAGTACTCAAAGAACTCAAACCAGGCTCCAAGCAAACCAAAGAGTGCAAAGACAAGCGATGTAGAGATCACCAGCACGGTAGCTGAAGAGGAAAAGGAGAAAGAAGAACAACATAGCAGAGATGGAAGTAAAGAAAGCAAAGTTAAAAGTAAAGACAAAGAGAAAGGTTCTAGTTTGAGTGAGAGTGCAAGTAAGGAAAAAGACAAGGAGAAGGAAACACGGAGGAACAAGCAGAAGGAGACAAAAACAGTTGACAATGAGACAGAGAGAAAGACTGTGGAGAAGATGTCAAAGAAAAAACAAGAGCAGACTTCAGAGGATAGTGGAATGAAAGAGGCTGTGGACAAGAAGAAAGAATCTGTGAAGAAACTTGGTAGTGCTTCCAAAAAGACTGTTAATCTCAAAAGGAAAGAACCTGTTAAAGTTGTTAAGAAAGAGGTGAAAAAGGATGTTTCTTCAAAGAATGATGCTGTAAAGAAGGAAGTGAAGAAGGAGGTTGTCAAGAAAAGTCCTGTAGCCAGCAAAGGGCAAGTAAAGGCAAAAGTTGTAGTAGAAGAGAAGAAGAAGGCCACAGGACAACCAGTTAAAAAAGTGGCAAAGACCACGGAGCACAGTACTCGCACTGAGGCTAAAACTAGCGACACAACAGCAGAGGCAGAAGTCAGCACTGTTAGGGCTAAAGAGATGCCTTGTCAAGATGTTGAAGAAGATTCAGTGAAAAGCCAACCAGCTGAAAAAAAACTTGAGAAAAAGAGTGTGAGAAAGATCAGTGGAAAGGAGAGCAAGAAAACTGGCAAAACTGAAAGCAAGCAAGTAACAGTAGTGGCAAGACAGCGTAAAGTACAGAAGGTCAAAGAGACTGCTGCTGAATCAAAGGAGAAAACTAAGGAAAAAGCAGTCAAAAAAGATGATGTCGTGGAGTCAGTCATAGAAAATGAAGTTTCTCACTCAAGAGAAACGGAAGCAGCAAGCAAAGATAATGGTGCTGAGGATGAAGACATGGAAGTGATTGATGATTTAGAGGAGGGGAGTCTTGGGGGAAGTACTGCTGCAAGTGGAGACATAGATTTCAGTGAAGAAGAAGAAGAAGAGGATGATGATGATGAGCCGTCAGGGTCTGTCACACCATCATCTTCAGTGTCATCCAAAACAGAATCAGAAATTGCAAGCGATGACGATGAGAAAGAGGACGAAGAACCTAGAGAAAGGAGACCGAAACGGAAAGCTTCATCGGCTACTGAAGAACAGCAATCCAGTGCGGAGAGCGATAACTCGGATTCAACGGAAAGTGTTCATGTTAAGAGTAAAGTGGCAAAAGCATCAAAGCAGAAAATTAATATGGATGAGTTCTTTGAGGAAGCGCGATACTTCGTTATGAAGAGCAATAATCACGAGAATGTTGCGCTGTCAAAGGCAAAGGGTGTGTGGTCAACACCAAAAGCGAATGAGAAGAAACTCAATGTTTCCTTCAAGAGATACAAGAATGTTATCTTGATATTCTCTGTCAAAGAGAGCGGGAAATTTCAAGGTTTTGCGCGGCTGGCATCCGAGGCAAAGCACGGGGGTCCAATGATCCCCTGGGTACTCCCACCGGGGATGAGTGCCAAGGCTCTGGGAGGAGTGTTTAAACTGGAATGGCTCAACAGGAGGGAGCTGTGGTTTAGCAAGTGTCTGCATTTAAGGAACCCATGGAATGAGAACAAAGAGGTGAAGATATGCCGCGATGGACAGGAAGTAGAGCCTGCAGTTGGTGAAGCTCTTTGTCGCCTTTTCCCAGAGGACGAGACAGTTGACATTAGCTCATCGCACCAGGCATCAGAACGACGCCACAGGAAGGATAGGGAATCATCTAGGCGTCATGCGAGACATTCCGACGATTTGCGCAAATTGAAAAGAAAGCGGCGAGGTAAAGAGTGGCTCTTTGTTGTCCTTGCTGTGCAGACAAGCTGCCTGGATAGCAATGATACTGATCTAAAGAATACTGCAACTTAAGGGCGCTCAGCATTTGTCAGACCTTGTTGGCGGGGTCAGCTCATATTGAATTCTGCTTAGCTGAGGGAGCTTCTTTTGTAGAGCAACGTCAGTTTGGCCAGAAACTGCTTCCATATAAGCAGCACTATTGCGTCGCAATAGCGAACTAGGCCCGGTTGTTCTAAAGCCGATTAACGCTAATCCCAGATTAAAAGTAAACCAAGGAGTTTATTTCTCTTTTCTAAGGTCTTGTTCAACGTTGATGTTCGCCAAAACTTTACCTTAGATGAAGGCAATTTTGTAAAACATAAAATAAGCAAAGAAACTTTCGTCAAAAAGTTGAAAATGTGAGATAAAAGTTCGCGCTAATCCTGGATTAAGTTAATAGGCTTTCGAACAACGAGGCCCTGGCTGGTCCGGCGCGCCAGTCCTGATGAATGCTAAGCGTCGCAAAGTAATATTTTTAAAGTGATTAGTGTCCAGGCGTGCGTTTCTCAAAAGACCCGAAAACTTTTCAGGCCCGAAAAGCCATTTGTAAAACTCCGACCCGCTTATTCTGTAAAGCTGGTCTTTTTATATTTTGTAAAGGGAATAAGTTAAGATAACTGGGAAATTTCGAGGCACGGAACACCTTCGTTTTCAAGATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96MU7	YTH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=YTHDC1 PE=1 SV=3
E9Q5K9	YTH domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ythdc1 PE=1 SV=2
Q9QY02	YTH domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Ythdc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003194 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR045168 all species →	Family	YTH domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12357 all species →	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:1990247 all species →	Molecular Function	N6-methyladenosine-containing RNA reader activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_003846-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.