Gene detail

Detailed information of FUN_003885-T1 in Acropora pulchra

Genomic Location: ntLink_8:16486206...16492093
NR annotation: XP_029197561.2, uncharacterized protein LOC114962686 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_003885-T1

ATGGATCAACCAAGGCATTCGCCTCCAAATGTTGCTGTTGAAATTGAGTATCCAGCTCTCCCACTCACCGAGGTATTGGTCGGCGCATACGATGATCCTTCGTTTTGTAGTTCCTCGTTTTTGAGTGAGAGGCTGTGTAGTTACCGCAATATGGATTCAAGACTACCTTCATCTAATATGGATATTAAGGAACTCCTAGTCGACATTGTACAAGCTGAAGGAGGAAAGATTTGCCTGAGCAGTTTAGAAGAAGCCTTTGAAAGGCGAACTGGGTTTGCATTATCAGCAATGAAAAGCTCAAGGGAAAGTAGTATCACAAACTCAAATAATAACCAGCAAGGAACGGTAGAGTACCTCCAGAGTATCCAGTCTGATGGAGGCCCCTTAAGGTTTAGTACCACTGACAGTTACATTTATCTGCATTTTGAGGCATCCCTTAACTGCAGTGCCGAATCTGAAATGTCACTATCTGAGGTCACAGTTGAATTGAAAGTTTCTGGTAAGATCACTCAGCTTGATCTCTCAAGACGTTGTTTTTCGTCGCAAAGAGAACTCCTTGAAGTTTGCAAGTGTGCCAAATTGCTGAAGAAGCTCATTATAAGGGATATCTGTTTTGCAAATGACACAAGGGAATCAGGCAATGTTGGCATTTCATTGGTGAAGCATATGAAGTGGTATTGCACTTCACTTGAAGAAATAGATGTAACAGGGTGTTCAGACGTTACCCGTAGTATCCTCCTTGAGTCACAGGATAATGCATTACAAGAGCATGGGACTCCTGTAAAAAGAGCCATTGATGTCAAAATAATAGATTCGCTAGAAGAACATTGTATCATTAAGGAACTTTTGACGCCTTCGCTCTTTTCCAAGCATTTATCTGCTGCGAGAAGCAGGATTGAGGAATTTGTAAACAAAGGTGGTCCAGCTAACATCAGTCATGATGGGTGGACATTTTTTCACACAGCTTCTGCCATTGGAGATGAACGTTTGATTTCCTGGCTTCTGAATACCAAATTCCAAATTCCAAAATTTCATTCAGAGGGCTCAAGGAAGCCTTCTGCATTAGATATAGCTATTTATCGCCATGATGCACCCGTGGTCAAACTGTTGCTTGATGCACAGGAAACCAGTGAGTACGATCCTTCTAAGTTTGTGAAGATGTTGTTTGGATCTTCAGAAGTGTGCAATATTCTTCGCCATGTTGATCAGGCCAGTGCCCCCAACCCACTAGATGTAGTCACCTTTTTCATGGAAAGCATGAGCCTGGAGTCAAAAGAGAGATTGCTGGTTGAATTCTTCAAGACACTAGAAACGTCCTTTGAAGATGTTAAAGCAAAGATCCCTAGGATAGAAGATATTCTAGCGGAGCTACTAGATAAGTTGATGGCCGTGGGCTGTAGCCCAGATGTTTCAATTGAAGAGCTTAATGGCAAGACTCTACTCATGTGTGCAGTGTCGAGCCCTGTTTTGGTCAATACACTGTTGAATCTTGGAGCCAAAAGTTGCATTAAGGATGAGGAAGGGAACACAGTGTTGTTTTATTCAGCAAGAGAAGCCGTCCATGGCACAGTTGAGTCATTAGAGGCGCTCCGCCGTCTTCTTCAAAGTTGCAAGGAGGTAAACAAATGTAACGATCACGGGGAAACACCGCTCCTTTACACTGTCTCGACTCACGGATTCTTTTCCAGAGGATCTTATGTCAAAACATGGGAGGTATTGGTTGATGCAGGAGCGCGAATTGACGCTAAAGACCGCCAAAACGAATCCATCTTAAACCTCATCCTGGAACATATAAAGCATTTGTTACAAGACCCCAAGATTTCTCAAGAAGAGACTCTAATCAATCATGCGGTTGATGAAACTATCAGAATGGTTGAGTTCGTTCGTGACAAGGATAGCAAACTGCTTAATAGCAGGGATAGCGTAGGAAATACAGCTCTTCACAATTTTGTAGGCTACTCCTCAATCCACGTTGATGAAATGGTTCAGATTGCTAAAGTCTTAATCAAATGCGGGTCTCTGTTGAACGCACAAAATGATAATGGCCAAACGCCACTGCACTTGGTTAAGTCATGGAGTATGGCTGAGCTCCTTTTACAGCATGGTGGAAAGGCCAACGCACAGGATTATCAGGGGCGTTCGCCACTTCTTTGTCGATGTATTCAGGAGGCGAGTAACGAGGAGCCATTGGACATGGTTGGATGGTTAGCATACGGATTGAACTTTGGAATGGATCCTTGGTTGGAGGACAAAGACGGCCAAAGTGTTTTTGACGTCTTTATGCAGCATGGGAAGTGCAGTGCTCTTCATTCCCTTATTTCTGCCAGTATTGCCAAAGACAAGGAGACTGTCTTTAAGAAAGACCAGAACGGTAACACTCTTTTGCACAAGTTATGCAATTACAATTTGTCCAAGCATTGCTTCTGTCTCTTGCTCCAAGAGGGCGCCGAGACCAATGCGTCAAATGAGGATGGTGACACCCCTCTACATATTGTCTGCAGGAAGATTAATCGTCTTTGTCCGCAAAGAGAAGGGAATTATCGGAAATATATAAGCCTACTTTGCGCATATGGAGCCAACTATAGGTTAAAGAACAAGAACAATTTTTCTGTGCTTGAATTGGTGTACCTTAAGAAGAATTTGTTATCATTTGTGAAGAGGCCCCGGAAGCAACGAGAATCGCAACCATTTTTCAAGTGGAGCCGTCGCTCAGAAGCTCACGTTCAAAAACTATCCCAGGTGGTGAGAAGACGTAACGCAGACAACATTGATGAATTCTTCTATCATAAAGATCCCATTGGTTCTGGATCTTTCGGCAGTGTTTTTGCTGCTATTAACTCCGAAGACGGAAAAGAAGTAGCCCTGAAAAGAGTAGAGAAGTTACGCTTGCAAACACGTCGAGTAAATCGAGAAGTACAGAGTCTTATACAACTTTCCAGCTGCCTGCATGTAGTGACGTACTTCCGGTTTATTGAACGGGCTGATTTCACTTGGATTGTAACAGAATTGATGGAGGGTTCCTTGGAGGATCTGTTGAGTTTGAAACTTAAAGCTGATCGCTTTCCTTGTCTTTGCAAAGACGTGTTGCAAGGTGTGCGATATTTACATGAAAACCATTTTGTGCATCGGGATTTAAAGGCAAGCAATATATTGTATCACTTTGACCAAGGTATACCACGGCTCAAGATCGCTGATTTTGGTCTCAGCAAAAATCTCGGAGCTGGGACCTCTTCTGGCTCGAGCAATAATGTTGGCTCAAGGTGCTGGATGGCCCCAGAACTACTTCAATCAGGCAGACCTGAGCACACATTCCGATCCGATTTGTTTGCGGTTGGCCTTATTTTCCATTATTTGTTGGCTCATGGACGTCATCCTTTTAAAGGGATTGATGATGGCTCTCCATTTGGGGTGGTTGAAAAAAACATATTAACTGACTCCAAATTTCTTTGTCATGACCTCTGTGAGGAAGCTAAGGAATTAATATTGGAGCTAATAGCTGCAAAAGAGGACGACCGACCATCGGCTTCAGATGCACTGCGACATCCATACTTTTGGTCAGATGACAAAAAGGTGAAGTTCTTAAAAGCAGTAGCCAATCAAACGGAAATTGCCACCTACAATCCTCGCCTCCACGGGCCTGTCATTCGTATCGTTCACCAAATTGAAAGCAGCTCATCTCCCTTGTCAGATTGGAGTGCGGTGTTCCCAACACTCTACAGCGAGATGACCTCAAGCCCTGGATTTCGCACGTATGTGACGTCCTCTGCGGTTCATCTTTTACGCTTCATTCGAAATGCGTATGCACACGTCTCAGACAGCAAACGAACAAAAGGATTCCAAGCAGCCCTATTAAATGACTACATATTTTTTCGAGAGTTGCCGAAGCTCCTCATGACTGTTCACAATGCTGTGAAATCAGAAAAATGGGAAACTAGAGCAGAAATTTCGAATGTGCTAAATTCTGTTGACTAG

Transcript

FUN_003885-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7XIT1	Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Oryza sativa subsp. japonica OX=39947 GN=IRE1 PE=1 SV=1
Q925K9	Testis-specific serine/threonine-protein kinase 6 OS=Mus musculus OX=10090 GN=Tssk6 PE=1 SV=1
Q9BXA6	Testis-specific serine/threonine-protein kinase 6 OS=Homo sapiens OX=9606 GN=TSSK6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF06479 all species →	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR038357 all species →	Homologous_superfamily	KEN domain superfamily	Interproscan
IPR010513 all species →	Domain	KEN domain	Interproscan
IPR045133 all species →	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954 all species →	IRE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498 all species →	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0070059 all species →	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604 all species →	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_003885-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.