Gene detail

Detailed information of FUN_004078-T1 in Acropora pulchra

Genomic Location: ntLink_8:18935349...18943825
NR annotation: XP_029188932.2, NADH-cytochrome b5 reductase-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004078-T1

AGTCCTTTTGGAATAACTTCGTCCGAGCTCAAAAAGTACTGGTATTTAAATAGTTTCAAAATGGCCGACGAAAACGTATTCGTAATCACAAGATAAACAATGGATGATCACGAAACTACAAATGTTCACTCTCAAAATACGGGCTTAAAAAGGAAACGACAAGGAGACGAAAATGGAGTGAAAATTTCACGTTCCGAAGGATTTTCTTGGTGGACTTCTTTGATCCTTGGAGTCGACTCATTTAATTGCATCCGAGTCAGCAAGAAAATCGCATAACTCAAAAATCCATCCAACAACAGGAAACAAATATCTTGATTGTGGCTTGCATTTGGTAATTTGATGGCACTAATCCTTCGGTGACAGCTTCTGTACAGCAAGTTGAGAAGTTTGACTGAGTAATCTGAGTGGAATCAAACTTGACTTGCTGTAGTCATTTATTGGCAATGTTTTTATTGTAGAGATCAAGCGATCATGCAAAACAAGAATCGTAAGGAAGCAAGATTTGAAGTTGTTTTTAGAGAGGTTGAAAAGTTGGTAATTTGCAACAGTTCAAGATACTTAATGACAATACGTATCCTCGTAACCATGGCAACTTTTAAAGCAAATGCTAATGAGGATATCTCATTCAGTCTGCCTGAGCCACCAGAAAAACCAGAAGACAGGGATTGTTGTGGTAATGGCTGCACTCCGTGTGTCTTTGACATTTATGAGGACGAAGTCTGCAAGTGGAGAAAAGAATGCGAGAGAATTAAATCCGGTGAAACTTTAGGTGACTCTTTGCAATCAGCTGATGGTGATGAAATTCTCAGTACATCAGAGTTTCACTCATTTATACTGGAGTCTGTTACCAGGCTGACAACTGATTCTTGCGTGTACAGGTTTCGCGTGCCAAAGCACAAAACACTTGGATTACATATTGGTCAACATTTGATTCTTAGAGGAAGTTTTCAAGGAATGCCCATTAGTCGACAGTACACACCAGTTTCTTCCACAGAAAGTCATGGCTTCTTTGACGTGCTCATAAAGGTGTATTCAAATGGCAAGATGTCAAGTTATATCAGAAGTTGGCAAGTAGGAGATATGGTGGAATGGAGGGGGCCTTTTGGAAGATTCTCATACCGGCCAAACAAGTTTCGGCGCATCGGAATGTTGGCTGCTGGCACTGGCATTGCCCCAATGCTGCAAGTGATACAAGGAATTTTAGCCAATGAGGATGATGAAACTTTCATTCACTTGGTGTACTCTAGTCAAAGATATGCTGACATCTTGATGAAAGATACACTTGATGAAATGAAAGCTTTTTGGAATTTCTCAGTGCTGTATATCGTAACAAAGGAATCCGAGGCTGACAAGTCTAATGTCAAGTACGGTGATAAAGTGTATTACGGCAGAATTAATCAGGAGCTTGTTTCTCGCGAGATGCCACAACCATCACCTGATGTTCAAATACTGATCTGTGGGACTAAATCATTTGATAAAGACATGATAAATTATCTTAAAATCTCGGGCTACACACCTGATATGTATTTTAAATTCTAGACATTAGGCCAAGTTTTTTTTAAAAGAACAAAAACCCTTTTCTGTAAATGTTTCGTTTTAACTTTCTTGAATTTCTTGGGTACTTTTTATTCTTAAGGTACTAATCCCTTAATTTATTTTTTAAGGATTAGTTTTTGATTTTTCAGAAAAGCAAACGACTGACTTTAAAATAAAGATGCAATGTAATGTAAAGTTAGTATGTTTCTATATTTTATGTTCTAAATTGTCTTCGTCACTTTTCTTGTTTGTGTAGTTTTAAAGCATAGTGCTGTGATGACAACTGAAGGGGAAAAAACGTTTTTGGAATAAGGAAATTATTTGTTTTCCTTTGCAGAAAATAGGATTGAAGGGTTGGGGAAGATGAATTTGGAAACTTAAAAAAAACCCAATCGCATAGTGGGAGATGGTTGAAGGACGGTGCTCACGAGAATAGGGAGCGTAAGCAAATTCGACGTCGACGGAAGCGAGAACGTCATCTGAAAATATAACTTCACGTTTCTGCATTCGTTCTTCAATTATTCAAAGTCATATGCTTGAAAACTTTGTTCTAACTATCCTGGAATTAAATTGGAACCAGCGTTCGGGACATAAGAACATAAGACAAAATTGAACATGTCATCATATGCTCACGTCTTCCACGCAACTGCAAAACAGGTCACTTCACGTCGTAGAAAGAACGAGAACGTTCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1AS42	NADH-cytochrome b5 reductase-like OS=Mus musculus OX=10090 GN=Cyb5rl PE=2 SV=1
Q6IPT4	NADH-cytochrome b5 reductase-like OS=Homo sapiens OX=9606 GN=CYB5RL PE=1 SV=3
Q54NC1	NADH-cytochrome b5 reductase 1 OS=Dictyostelium discoideum OX=44689 GN=cyb5r1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00970 all species →	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF09791 all species →	Oxidored-like	Oxidoreductase-like protein, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001834 all species →	Family	NADH:cytochrome b5 reductase-like	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR008333 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR019180 all species →	Domain	Oxidoreductase-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19370 all species →	NADH-CYTOCHROME B5 REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004128 all species →	Molecular Function	cytochrome-b5 reductase activity, acting on NAD(P)H	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00326	CYB5R; cytochrome-b5 reductase	EC:1.6.2.2	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.