Gene detail

Detailed information of FUN_004127-T1 in Acropora pulchra

Genomic Location: ntLink_8:19593099...19598423
NR annotation: CAH3134959.1, unnamed protein product, partial [Porites lobata]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004127-T1

AGGGAGTATAAAACAGTATCAAATAGAAATTCCAGCTTGTAAAGCGAAACGATATTTTACAACACAAGTAACTTGGTCCTTAAGGATACACATAACCAACTCAGACGATACGTTGAGTTGCGCGTCGTGCCGTCAAAGACGATGAGTTATTCCCAAGGTAGTGGCAGTTTAACAACAACTGCTGGCTCCTCAGTGGCTACAAGCAACAGCGCTGTAAGCAAGCAAGCGCAAGCTACCGCGGCCGAGAAAAAACGCACACCAAAATGCGCGCGGTGCCGTAATCACGGCTTTGACTCGATCTTAAAGGGACACAAGGGGTTTTGCCGATGGAGGGATTGTCTGTGTCCAAAGTGTTTGTTGATAGCAGAGCGGCAAAGGGTTTTAGCTGCACAGGTCGCTCTTCGGCGACAACAAATGCAGGAGCACCGCAGTCCGCTCCCTCCCGGAGATGTGTTTACTGCTATGACTCGAGTCAGCAACAATGAAAACCAGAGCTCTTCGAGAAGTTCCACTCCGGGATCTACTAGCGCCGCAGAAACAACAGAGATAAAGAAAGAAGCGCCTTCGCCAGTGACCGAAACTTGTTCTGAAAATGTTACGGTCTCAAATTCATTCGCAGAACATCATCATCATCATGGATTTATTGGGAACTCTCAGAAGGATGTCCACGCGGAATGTACTTGTTCGGCGTTTCGACCTTTCGCTGGAGTTTTACCACATCATTTGCAAGGACTTAAAAGAAAGACGCAAGGAGAAGTTGCTCTCGAAACAGGTCATGTTTACAACCCGCCACCATTGCTAGGTGAGTCACAAGAAAAAAGGCGTCGATTTTCAAACGACTATGACGCAGTAGAGAAGACGTCTATTTTGTTTACGGGACAAAGACGAGCTTCGGCGATCGAGCTTCTCATCCGAGTGTTTCCGAAGATCAAAGTCAGCGTTTTGCAGCTTATTCTCCATTCCTGCGGCGGCGACTTAGTACAAGCGATCGAAGAAGTCCTAACACGATACAAGAATGACGCGACAACTGCAATTATGGGCGCTCCTAATCCGTGGGGAAGACCTTCACAAGAACTTCGAGAATTTCATCACGCTGCTTTGCGAGCGGATAGTTTTAAGTACGCTCGAGGTCCGGACAATTTCCTAAACGGCCCAAAGTCTGCTTTTACGCCTCTCCCGGCTCTGGCCAAAGCTCATTTTATGAGCTCATCTTCGGGAAACTATCCGTTCGCTTTGGAACAAAGCCGAAGTAAAGAGAACTTTCCGATTTCGCTGTTTTTCGACTCTCGGTATGGCTCCTCACTATCTCGGCCCTCCGGTGAGAGAACTGTAGTAGGCTTAGACAAAGCCAAAGACAGTGAAACTATGAGTAGCTCCGTCGAACGTTTTCAGACAATTAGCGAGACGAGAGACGCTTTAAGTCCGCCAAGGACAGAAAGAAACAAAAGTCAAACACCGTAATACTTCATTGACGAGCGAACATTTGCGTTTCAATAAGCGCTTATTCCAAGTATACTTCAAAACTATATCAAACGTGCTATTAAAAACGCAAAACGGACGTTAAGAGTTGTTGACCACAAAGGTGATATCTCCGTGAGGGTCAACTTCAAAAAATTCAGTTGCGAACGGTAAATTAGAAAGTAAATTGGATGTCCATTCGAATTTATTCACTATCGTCTCGAAACGAACATTTTATCCCAACTTCACATCTGGTCTTCTTAGATCCCGTCATAAATTTAAATGTTCCTTGTCAAGACTATTTAAAAAAATATTTCAAGGATGACCACAAAGAGATACAAACTATACACTATAAATGGTTATTGCCAACATTGACTTGACCATGTGAAAACTCAGTATCTTTTACTTCAGTTGGCTTCGGTTAGAGATACGTTTAAGAAACTCTGTACAGTAAGAATTGTAGAATTGACAAAATGGCAAAGGTTAAACATGAATATATAAAGAATTTGTAAGAGGACCAAAGAAAACAAAAAAAAAAACAAAATAATAAAGAATTCTCTTTGACAAAAACGTAGCTGGATATTTTTATCACAGATAAACCTGTGTTACTTAGTGTGATATAAATCTTGTCCAACTTGAAACGTGTAATAAATTATCTGTAGCCGAATTAAAGACTATACGTAAGAATTATGTAGAAAGGTTAAAGAAACAAAAAGCCCCGAAAGGAAGTAGTTTTTACTTCCATGGTAATAAAAGAATCATTTTGTTGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76L87	Doublesex- and mab-3-related transcription factor A2 OS=Oryzias latipes OX=8090 GN=dmrta2 PE=3 SV=1
Q2I327	Doublesex- and mab-3-related transcription factor A2 OS=Xiphophorus maculatus OX=8083 GN=dmrta2 PE=2 SV=1
A4QNP7	Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis OX=8364 GN=dmrta2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008325 (this species only)
Transcription factor family	DM · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03474 all species →	DMA	DMRTA motif	Domain	Interproscan
PF00751 all species →	DM	DM DNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036407 all species →	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR001275 all species →	Domain	DM DNA-binding domain	Interproscan
IPR005173 all species →	Domain	DMRTA motif	Interproscan
IPR026607 all species →	Family	DMRT family	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322 all species →	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548 all species →	Biological Process	sex differentiation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_004127-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.