Gene detail

Detailed information of FUN_004292-T2 in Siderastrea siderea

Genomic Location: contig_3:11583250...11598369
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_004292-T2

ATGCAGTTGCGGTTTTCCGGGAAAAGCGCGcgatccaaaatggcggcgatGGAGGTATCGGCTTGCTCCCCTCATAAGGTCCCACAATCTTTGATCAATAATGTTTTGGCAATTTGCCCTGATGCTGATCCAAAGGATGTCGCCAAGGATTTAGTGATCACAGGAAGTGCTACGCGGACTATTAACAGGATATTAGACGGACAGTTCCCTGCAGCAGTTAACATTGACTTTGATGACACACAATCAGACTCCAGTGCCTGCAATGAAGCCAAAAATGCTGTTGATTATTTACCATCCAAGAGTTCAACAATGTCTGTGAATAGAGCAAGGACAACTGAAATCCATGATGACTCCAGTGATACAGAAAAATACTCTGAttctgatgatgatgacaatgttATGATACTTCATGAGGAAAGAAAAAGTTTGTTCAGTGCTTTGAAGAGCAGAATGTATGCCAAGGCATCAGATAAAAGCTGCACTGAAGGATCAAAACCTGCAGGAATACATACAGACAGTGCGGCATCTTATTGCAAAAATAAAGATAACAAGCTGACAAAACGACCTGTAAAAACCAAGAGGACAAGCTCAATTGTTGATCTTTCCTTctcagatgatgatgatgatctttGTGTAACAAAGAAAACTGAATGTAAGGTTAATGTACATTTACCATCTTCCGAAACTTGGGCATTAAGTGAGGCAGCAGACTGTGTCATGGTTGACCCATACAAAAGTCAAAGTGACAAGACCCACATGCAGGATAAGCATGCAAGTGAGCCAGAATGCTTTTCAAAACAAGGGACAAACTTTGTGAGTTCACCCCTATCTGACCATGATACTGACAACTGTGAAGACAGTGATGATTTTCCTTGTGTTCTACCTTCTAGAACAAGCAGCCAATCCTCAACCTCTAATCTTAGCTCAGGAAACTATCTAGATTCTCAGGACAGTTCTGAAATCCCtgtgaagagaaagaaaaggacCGCTGAGGAAATAACAAGGCAAAGGAATGAGGCTTTGcaaaagaaagaagagaaagaacgTGAACAGAAAGCAAAGAAGGAAGCTAAAGAGAAAGAGAAACAGGCTAGGCAGCAAGCCAAGGAACAGCTGAAAGCACAGAAGGATAAGGAGAAGCTCTTGAAAAAGGCAGACAGTTTGAACCAGAAAGTCAACAATCGTTTGGATGGCTGCATCAAGCAAATAGTGGTGTGCATTGATCCTGACATTTTAACCAGTGGCCAGCTGCCTGAAGAAAGCATCCTTCTGCAAAAGTTAGAAACATTGGGTGTCCGCCACAGACTTGAATCACAGTTAATTCCTGCCAGCATCACTTGGCAGAGAGCGGTTGTGGAACATGATGTAGCAGAGACATTCCAGATCTCAACAAAGACTACGTTTGTTGAAGAAAACCATGCAGTACTCCGTCTGACAGCCATGAAGTTTGTTGAGATGATTTTTCAGTTCCGTGAGGAGATGCAGAACCCTGCTATTTCTGTAATTGCTGATGACGAAACTCTGTCTGCATTCTGTGAAAGAATTCTTGACATCTATCAGGGAAACGTTGTTACGCTTGTTACCATGGGCCTTGAGAAGTATTTCAGAGACGTCAAACTTACCCAACAAAGGCAATTCCGAAGCGCAGTCCTCGGTCCCAACTCCGCGAACGCTGAAAAGCCCAGCGGTAAAGGACGGAAGAAGACCAACAAGGGGTCTGGACCGAGTGTTATGGTGTCACGTGTTGATGTTGAGGAGGCGCTGGTGGATCTTCAGCTAAGACATCCAAACTGCCGAGTGCGCATGTGTGAAACTGAAGAAGAATTTGCTGATATGCTGGCCATGTTCACTAAAGCTGTTGCTGAGGCTCCTTTCAAAAAGAAGCAACCGGAGACGTTTAGTTTCTGTGTCGAAGGAGGAGAAAAAGGATCTGTGAAGGGTCCAGTAGAATACCTGAAAACTAGCTTTCAAGCTAAGTGTATATACACTTTAAATAATGTCTATACCTATGGCTACATCTTTGAATTACTATTTGTGGTCGGAAACCGCATATCTGATCATTCTGCAGGTGTCCAAAGAAGGTGTAGGTTTAAAGAAAGTCTGGCAGCAGCAGTTTCAACAGTTCAGAAATGTGTCAGCTGA

Transcript

FUN_004292-T2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047524 all species →	Domain	Crossover junction endonuclease EME1, XPF-like nuclease domain, plants/arthropods	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR033310 all species →	Family	Mms4/EME1/EME2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21077 all species →	EME1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_004292-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.