Gene detail

Detailed information of FUN_004342-T1 in Acropora pulchra

Genomic Location: ntLink_8:22131482...22144458
NR annotation: XP_029198595.1, LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_004342-T1

ATGGACAAGGAACAGATAAATGCTCTCATGAAGTATGTTCGTGGGGAAATGAGCTTTGCTGAATGGATTGAAAGTGGTGGAGTGACAGGTGACAGGGAACAAAATGACGATGACAATGAAGTTGAGGTGCAAGATGATGAAAACGAGTTCGATCAGGAGTGGGATATTGCAGAGCAAAATATCCAAGATGATGCCATGGAAGAACAGCGAGACTCGGGTGAGCTGATCACTTTTGTGATACCCGACTCAGTTTTTGATGCTCTGTCAGAAATTAGCGTTGATGCTAATGCTTCCAGTACTCAGGAAAGCACTGATCAGATGGAGCTGCCCGCAGATGTTGCAAACGCTAGTGACCCACATTCAGCACAGATACTCCAGAGTCCAGTAAAAATGACCGATCTATTGCTACAAAAGTCTGGTGCAAAAAGTGCACAAAAACACGGTGGAACAGGAGTAGATGAGTTCATGCAGGAAATTCCAGCCACTCAGAGGCGCCGTGCGAGAGCAAAGAGACGTAGACTGTGCGAGTTACCTCCAAAGCTAAAACAAACAATGGGTCGTGCCAACATATTGTGGGCTAGGGGAGAAATTGAGCAAGCCAAGGCAATTTGTATGGAACTGATTAGACAGGTTCCAAAATGTTCAGAACCATTTCAGAGCTTAGGAATGATGTTTGAGGAACAAGGAGATAAAGCAAAAGCACTTCAGTTTTTTCTTATAGCTGCTTTCCTCAGCAAGTCTGGTGATGCAGATGAATGGGCAAAGCTTGCTATGATGTCAATTGAAGAAAATAATTTTGACCAAGCCATGACTTGTTACACTCAAGCTCTAAAGTTGGAACCTGCTAATGTTGGTATTCTCTGGGACTGTGCTGCCCTCTGTTATCAAATGGACAATTCTAAGAAAGCGTTGGAATGTTATGAAAAAGCTTGCCAGGCTATGTCTACTTCAGCTGATGGAGCGAAGTACATAGATCTTGTGTGTGAATTGGCAAAGTTGTACCATGAAAACAAATCACCAGAAGAAGCTGCAAGTGTCTTGGATGCAGCTTTTACTAAATTTCCCACACATGTAAATAACCAAGCTATCAACATGCTTGCAGACCTCCATATGACCTCCGAATCATACGAAGCTGCACTGCAGGTTATTCTTAAGCACTGCGATGCCAAGAAAGAAGAGTCACCCAAAAGCACTGAACAATCACCTCTGACTTCATTCTCACTTTTCATGAGTCCAACTCGTCATTTGAATTCAACAGATTCACAGTCTGACAGTGAAGAATCTAAAACCGACTTGATCCTACCAGATGACCTGCCTATTGATCTACGTGTCAAGATTGTTGTCTGTCTCATTTACTTACGAAATTTGCATCCCATTAAGAATTTGCTTTATCCACTGTTTGTACAATCAGTGGACGATGTAGGTGACCTGTACATTGATGTTGCTGATGCTTGCACAGAAAATGGTTACTATGATGAAGCTTTGCCGATTCTAAACATGCTCCTGGTCTCAAATAAATATAACATGGCGGGAATATGGCTCAGAAAGGGTGAATGTCTCCACTCTCTGGGAAGACTTGAAGAGGCGATCACCGCATACGCACAAGTTGTTCATTTAGCTCCCAATCATCTCGACGCTAGGTTGATTTTAGCGTCCCTCTATCAACAAGTAGGAAGACCAAACCAGGCTCTGGACGTACTAAATGATCCCAGATGTACAGAGAACAATGCAGATACTTCAGACAATGACACTGCGATGGAAACTGGTTCTCCTTTCGCAGAGGAATTGGATACAGATCACACGGAACAAGTTACAGTTCAGCCACAGGATTTTAGACTCCTCTTCCACAAATGCGCCCTTCTGGATTCTCAAAATCGCACCGAGGAATTTCTGGAGGCAGGGATGGATTTGTTTAAGTGGTTTCTTATTGATGTCTATGACAGCAAAGGATTGGCTGAGATGGCTCTCAAATCCACTAAATTCCAAAGCAAAGTTAAGAGAAGCGAAGCTACAGAACAAGAGGAGGCTCGTCTTAAAGCAAACGCCCGTTGCGACAATAAGGTTGAAACAGGAATAAGGACTGAAGAATGGTGGGACATGTTTAAAAAGGTCGTGTCCAAACTGAGTCATCATAAGCGGCATGCTGATGCACGGAAACTTGTGTTGTGCGGTCTGTCTTCTAAGCGCTTTAGCAAAGCAGATTATCAAACTGACCTTATCTTTATGAGCATGGTGGCTCTCTACTTGAATAGGGAGTACCAAATGTCTTTCGACGCAGCGAAAATTCTCGCGTCGAGGGACAGGCGTAAACCCATAATCTGGAACTTAATGGCTCGAATAACTGCCAAGTCAGGTGATTCCAGGCACAACAGATATATTTTGCGACTTCTTATAAAGCATCCAGATGAACTGCCCTTGGTGTTGTTCAGCGGACACAACGCTGCCGTCAGTGCGAGCTACAGATTTGCTATAGGTGAATACGTCAGAGCATTCCGGCAGGTTCCCCACGATCCACTCGTTACGTTATGTCTCGGTCTGCAGTATCTTCATTTAGCTTGTCAACGGTTTCCACGGAGCAGACATACTTGTGTTGTGCAGGGTATTATCTTTATGTTTCAATATCTTGGCCTCCGCGGCGAATGTCAGGAAGCATATTATAATCTTGGGCGTGCCTTTCACCAGTTAGGATTGCTTCAGTTTGCTCTTCATTACTACAATAAAGCTTTGGCGTTCCCCTTGTACGAGGCTTCGAAATCTCCCGGACATACATCGGTTGAGTTTTCAGACAAACACGACTTGCACAGGGAAACCGCGTTCAATCTCTCTCTAATCTATCGAGCAAGTGGAAATGAGCTTATGGCTAAAGAGCTTCTAATGACTCATTGTTGGGTGTAA

Transcript

FUN_004342-T1

CTTTTGAAGGTGCATTAATTCTCAGCAATATGGACAAGGAACAGATAAATGCTCTCATGAAGTATGTTCGTGGGGAAATGAGCTTTGCTGAATGGATTGAAAGTGGTGGAGTGACAGGTGACAGGGAACAAAATGACGATGACAATGAAGTTGAGGTGCAAGATGATGAAAACGAGTTCGATCAGGAGTGGGATATTGCAGAGCAAAATATCCAAGATGATGCCATGGAAGAACAGCGAGACTCGGGTGAGCTGATCACTTTTGTGATACCCGACTCAGTTTTTGATGCTCTGTCAGAAATTAGCGTTGATGCTAATGCTTCCAGTACTCAGGAAAGCACTGATCAGATGGAGCTGCCCGCAGATGTTGCAAACGCTAGTGACCCACATTCAGCACAGATACTCCAGAGTCCAGTAAAAATGACCGATCTATTGCTACAAAAGTCTGGTGCAAAAAGTGCACAAAAACACGGTGGAACAGGAGTAGATGAGTTCATGCAGGAAATTCCAGCCACTCAGAGGCGCCGTGCGAGAGCAAAGAGACGTAGACTGTGCGAGTTACCTCCAAAGCTAAAACAAACAATGGGTCGTGCCAACATATTGTGGGCTAGGGGAGAAATTGAGCAAGCCAAGGCAATTTGTATGGAACTGATTAGACAGGTTCCAAAATGTTCAGAACCATTTCAGAGCTTAGGAATGATGTTTGAGGAACAAGGAGATAAAGCAAAAGCACTTCAGTTTTTTCTTATAGCTGCTTTCCTCAGCAAGTCTGGTGATGCAGATGAATGGGCAAAGCTTGCTATGATGTCAATTGAAGAAAATAATTTTGACCAAGCCATGACTTGTTACACTCAAGCTCTAAAGTTGGAACCTGCTAATGTTGGTATTCTCTGGGACTGTGCTGCCCTCTGTTATCAAATGGACAATTCTAAGAAAGCGTTGGAATGTTATGAAAAAGCTTGCCAGGCTATGTCTACTTCAGCTGATGGAGCGAAGTACATAGATCTTGTGTGTGAATTGGCAAAGTTGTACCATGAAAACAAATCACCAGAAGAAGCTGCAAGTGTCTTGGATGCAGCTTTTACTAAATTTCCCACACATGTAAATAACCAAGCTATCAACATGCTTGCAGACCTCCATATGACCTCCGAATCATACGAAGCTGCACTGCAGGTTATTCTTAAGCACTGCGATGCCAAGAAAGAAGAGTCACCCAAAAGCACTGAACAATCACCTCTGACTTCATTCTCACTTTTCATGAGTCCAACTCGTCATTTGAATTCAACAGATTCACAGTCTGACAGTGAAGAATCTAAAACCGACTTGATCCTACCAGATGACCTGCCTATTGATCTACGTGTCAAGATTGTTGTCTGTCTCATTTACTTACGAAATTTGCATCCCATTAAGAATTTGCTTTATCCACTGTTTGTACAATCAGTGGACGATGTAGGTGACCTGTACATTGATGTTGCTGATGCTTGCACAGAAAATGGTTACTATGATGAAGCTTTGCCGATTCTAAACATGCTCCTGGTCTCAAATAAATATAACATGGCGGGAATATGGCTCAGAAAGGGTGAATGTCTCCACTCTCTGGGAAGACTTGAAGAGGCGATCACCGCATACGCACAAGTTGTTCATTTAGCTCCCAATCATCTCGACGCTAGGTTGATTTTAGCGTCCCTCTATCAACAAGTAGGAAGACCAAACCAGGCTCTGGACGTACTAAATGATCCCAGATGTACAGAGAACAATGCAGATACTTCAGACAATGACACTGCGATGGAAACTGGTTCTCCTTTCGCAGAGGAATTGGATACAGATCACACGGAACAAGTTACAGTTCAGCCACAGGATTTTAGACTCCTCTTCCACAAATGCGCCCTTCTGGATTCTCAAAATCGCACCGAGGAATTTCTGGAGGCAGGGATGGATTTGTTTAAGTGGTTTCTTATTGATGTCTATGACAGCAAAGGATTGGCTGAGATGGCTCTCAAATCCACTAAATTCCAAAGCAAAGTTAAGAGAAGCGAAGCTACAGAACAAGAGGAGGCTCGTCTTAAAGCAAACGCCCGTTGCGACAATAAGGTTGAAACAGGAATAAGGACTGAAGAATGGTGGGACATGTTTAAAAAGGTCGTGTCCAAACTGAGTCATCATAAGCGGCATGCTGATGCACGGAAACTTGTGTTGTGCGGTCTGTCTTCTAAGCGCTTTAGCAAAGCAGATTATCAAACTGACCTTATCTTTATGAGCATGGTGGCTCTCTACTTGAATAGGGAGTACCAAATGTCTTTCGACGCAGCGAAAATTCTCGCGTCGAGGGACAGGCGTAAACCCATAATCTGGAACTTAATGGCTCGAATAACTGCCAAGTCAGGTGATTCCAGGCACAACAGATATATTTTGCGACTTCTTATAAAGCATCCAGATGAACTGCCCTTGGTGTTGTTCAGCGGACACAACGCTGCCGTCAGTGCGAGCTACAGATTTGCTATAGGTGAATACGTCAGAGCATTCCGGCAGGTTCCCCACGATCCACTCGTTACGTTATGTCTCGGTCTGCAGTATCTTCATTTAGCTTGTCAACGGTTTCCACGGAGCAGACATACTTGTGTTGTGCAGGGTATTATCTTTATGTTTCAATATCTTGGCCTCCGCGGCGAATGTCAGGAAGCATATTATAATCTTGGGCGTGCCTTTCACCAGTTAGGATTGCTTCAGTTTGCTCTTCATTACTACAATAAAGCTTTGGCGTTCCCCTTGTACGAGGCTTCGAAATCTCCCGGACATACATCGGTTGAGTTTTCAGACAAACACGACTTGCACAGGGAAACCGCGTTCAATCTCTCTCTAATCTATCGAGCAAGTGGAAATGAGCTTATGGCTAAAGAGCTTCTAATGACTCATTGTTGGGTGTAATAGTTTCCTCTGTATCAGAAATTATCAACGAAAGAAATATTTATTTATTATAGCTATTGTAAATATCTTCAAAGAATTGTTGCCAAGCAGATTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5Q9	General transcription factor 3C polypeptide 3 OS=Homo sapiens OX=9606 GN=GTF3C3 PE=1 SV=1
O74458	Transcription factor tau subunit sfc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sfc4 PE=1 SV=1
P33339	Transcription factor tau 131 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TFC4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039340 all species →	Family	Transcription factor Tfc4/TFIIIC-102/Sfc4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23082 all species →	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0006383 all species →	Biological Process	transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15201	GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.