Gene detail

Detailed information of FUN_004406-T2 in Acropora pulchra

Genomic Location: ntLink_8:22942049...22944850
NR annotation: XP_029184847.2, heterogeneous nuclear ribonucleoprotein U-like protein 1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004406-T2

AAGTTGTTTACGTGAAAACTGTCACCACAAAACCTGCTCTTATAAAATGTATCGCCAACCATACAGTGAAAACTACAATCAGTATAGATCGCAAGTTCCCTTCGAAAACCAAAACACTAACTTTGATTGCAAAGGGGATGTGTTTGGTAGGGATGTTTCACATGCACCTGGCATTGTTTTGGATGATTATAACAGCGATCTCAACTTTGTCATCGAATCTGATGGAGTAACAGGGTCTAGTTTGCACAATGATGGATTTGAATACATGTGGGCTGGAGCCAGGGCCACTCATGGCGTCAAAACTGGCAAGGTAGAATGTTATCGATAGCAATATTGTTTCATTTTTACCCCCCCCCCCCCCCCAAAAAAAAGAACATGGCTGAAATCCTGCCCCTTATTTCTTGCGTGTACGCTTTTAAACAATCAAATTGGAAAGGTTGATATTTTGTTAGCATCCTTGCTAACAAATTCGGCAAGTTTCAAGTTAATTGACTTTTTTTAACTGAGGATCCAAATTCCTGTTTGTGAAATCAAGGGTGTAGCTAGGGCGGAAGGGGGGGGGGGTCCTAGGGTGCCTGTGACCCCTTCTTTGTAGGCCTTTTTTTTCCAGCAAATAACCTACAATGTTCAGATGGCAAAAATACCATGACAATATCTAATGGCCTTTAAAGCCATTGTTGGAAAGCCTATTTTTTTAAAATTTGTTTTATTTCACTGCTCATCCGAAAATTGTAGTAACATTAAGTTAAACACAGCATGGAGGTTGACATGACAATCTGGTGAGTAGCCTCTGTTTGACACGGTGTGACCCTTCCTTTGAAAAATCTTGGCTATGCCCTTGGAAGTGCCTATGAAACTGTAATATAATGAACATAAGAGATGCAGGAAGTTATGAAAAATTATTAGCAATGATGCAGTGAAGACAAGATTATGCCACATGCATGTAGACAAAAAAGTGTTTAACTGCCCTAAACCTAATACCAAGCAACCGGTTGTCTTATTTTCTTATTTTTAGGTTTACTTTGAAGTTAGTATTCTTGAGAAGCTGCCTGTTACAATGCCACAGACAGAAACCAATCCCCATGTTGTAAGATTAGGATGGTCGGTGGATAGAGCTAATCTACAGGTGGGAGAAGATAATTTGTCCTTTGGCTATGGTGGAACAGGCAAGGCATCTGTCAACAACAAGTTTTTCAACTATGGGGAGCCCTATACTTCTGGAGATATCATAAGTTGCTACATTGACCTTGATGCTAATCCTGGAGTCGTACTTTACAGCAAGAATGGAAAATATCTTGGTGTAGCTTTCCATCTTGACCATAGTGCTAATGGACAAACCTTCTTTCCTCATGTTACTGTTAAGAACATGCGTCTTTTGGTCAACTTTGGCCAGTTCCAGTCTTGTTTACATTCGCTCGAAGGATTTTGCTTTCTCACAAGGTTACCACCCAATTTGCTGGAGCGAGGCTCCACAGGACCAATGTCAAGAGAGCAATGCGAGATAATAATGATGGTGGGACTACCTGGCTGTGGGAAAACATTTTGGGCAAATAGATATTCGAAGGATCACCCTGAAAAGAAGTTCAATATTTTGGGAACAAATAGTATTATGGACAGGATGAAAGTCATGGGTCTAATGAGGAAACGGAATTACCATGGTCGTTGGGATACACTTATTAAGCAAGCTTCCGACATTTTGAACAAGGTTTTCAAAATTGCCGAGAGAAAGAATCGAAACTACATTCTTGACCAAACCAATGTGTATTTCAGTGCTCGCCGCAGAAAAATGAACAACTTCAAGGGTTTTCGTAGGGTTGCTGCTGTGATTGTAAATTCAAACGAAGTTTTGAAGGAGAGAACAGAGATGAGAGAAAAAGAAGAAGGGAAAATTGTACCCCAATCTGCTGTTATGGAGATGAAAGCAAATTTTGTTCTTCCTCAAGTGGGCGAGGTTTTTGATGATATTTGGTTTATTGAGGAGGATAGGGCTTCATCTGAACGTCTTGTTTCAGAGTTTCAACATGAGGGCAAGGAGTTTAAAGAAAGCCAAAAGAAACGCAAACCAGAGGATCCCACTGTTGATGGGCAGAAATTTCCTTCTTTCAAAAGACAATGCAGTGACCAGGAGAGTCCCCATATTCCTCCAAAATATATTCCTGGTGGTTTTCAGGGTAACTTAAACCCAAGAGAGCCAAGAAGTGTACGCCCCCATGAACCTCAACATGGTTCCTTACCTGGCACCTATGGAGCCCCTCTTCAACCACACAATGACTTCAGACCTCCACTTCCATCATACAATTATGGTTCCCAGAGACAGCAAGAAAGCCACAGCAACAGTGAACCACATAATGACGGAAGATACCAATCCCGCTATTTTCCCCCAAGGAATGTGGATGCTAATTATCAGCCTCATCTTCAAATCCCAAGTCATGAAAACAGATCATTTCAGCCAAGGGGTGAAGGGTATATGAATCAATTCCCTTACCAAGGACCACATATTGGAGACTTTAATAGCTATGACCAGCCTGATGCATATTGGCAAAGAAACAGCCAACCCTACCAACCAAGGCAGGGCTATTATGCAGAGACACCCAGGCAGGGTCAACGTGGCTATGAACATTATTCATACGATAGAGGGTATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BUJ2	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens OX=9606 GN=HNRNPUL1 PE=1 SV=2
Q8VDM6	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 SV=1
Q00839	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR035778 all species →	Domain	Heterogeneous nuclear ribonucleoprotein U, SPRY domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12381 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15047	HNRNPUL1, E1BAP5; heterogeneous nuclear ribonucleoprotein U-like protein 1	-	Influenza A	ko05164	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.