Detailed information of FUN_004457-T1 in Siderastrea siderea

Genomic Location: contig_3:13962713...14002574
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00059
all species →
Lectin_CLectin C-type domainDomainInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF12248
all species →
Methyltransf_FAFarnesoic acid 0-methyl transferaseFamilyInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan
PF01822
all species →
WSCWSC domainDomainInterproscan
PF20519
all species →
Polycystin_domPolycystin domainDomainInterproscan
PF15711
all species →
ILEIInterleukin-like EMT inducerDomainInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016187
all species →
Homologous_superfamilyC-type lectin foldInterproscan
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR002889
all species →
DomainCarbohydrate-binding WSCInterproscan
IPR001304
all species →
DomainC-type lectin-likeInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan
IPR016186
all species →
Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR051223
all species →
FamilyPolycystinInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR022041
all species →
DomainFarnesoic acid O-methyl transferaseInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR014010
all species →
DomainREJ domainInterproscan
IPR042060
all species →
DomainPolycystin-1 like, PLAT/LH2 domainInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR046791
all species →
DomainPolycystin domainInterproscan
IPR039477
all species →
DomainILEI/PANDER domainInterproscan
IPR003915
all species →
FamilyPolycystic kidney disease type 2 proteinInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877
all species →
POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005262
all species →
Molecular Functioncalcium channel activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0050982
all species →
Biological Processdetection of mechanical stimulusInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_004457-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_004457-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
42.6Max TPM
2.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.22 4.37
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 29.85 42.60
unannotated 1 1 14.51 14.51
live coral tissue/skeleton 1 1 29.88 29.88

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP