Gene detail

Detailed information of FUN_004505-T1 in Acropora pulchra

Genomic Location: ntLink_8:23855708...23861291
NR annotation: XP_015752698.1, PREDICTED: ATP-dependent Clp protease proteolytic subunit-like isoform X2 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004505-T1

CGTCGAGGCATCAATATTATCGCGAGACAAAGTAGAGGAATTCATACATCTTGCAGGAGAAACTTTTTAATTCCCATGGTTATTGAACAGACGGGCAGAGGTGAAAGATCATATGACATTTTCTCTCGTCTCCTTAAAGAAAGAATTGTCTGTGCCATGGGTCCTATAACAGATGAGACATCCAGCCTTATTGTTGCCCAGCTTTTATTCTTACAGTCAGAGAATGGTAGAGCTCCTGTTCATATGTACATCAACAGCCCAGGTGGCTCCGTCACTGCAGGGTTAGCTATATACGACACAATGCAGTATATTCAGCCTCCAATATCTACTTGGTGCATTGGCCAGGCATGCAGCATGGGATCACTATTGCTGACAGCTGGGAGTCCAGGACTAAGGCATTGTTTACCACATTCTAGAGTCATGGTACATCAACCACACGGTGGCGCTAGGGTAAGTATCGCTCATCAACATATGTGGACTTTAATTTACAACAATGAGTGTAAATGATAAAAAATATATTAAACAAAGCCCGAGAGAGTTCACGTAGAGATGCTAAAAATATGTATTGTATATATATATAAAAGAATAATCACAATAATAATTTCTATGCTAAAACAGGGTTTAACAAAATTAAAACAACAACTAGGTATCATACAAAATTGTTCCTTCTAAAGCCAGACTACAAATCAATACGCCACCTGAAATACATATGTGGACTTTAGTATACTGCATTGATTTCTTCTAAAATAGTGTTAAAATCAAAGCTTTAAAGAATACCGGTCGTATTTTGATGCAACGGCAGCCTAGAATAACCATCGTTCATTGTGTGGTAACTAAGATCGGGGAATGCTGTGAGAGAATCGGAGAGATCGAGATTGATCATGAACGCAGACGATGTTCTGGTGGTTGGTCAGAACCGGGAGGAGCACATAAAAATGTTGAGGATGATCACTTGTACTTTGGCAAGTCTTTGGTTGAGGTTGGCGGAATCGAAAACCGTCGCAATGACGTGGAATACGACGGAGGAGGTCAGGCTAAAAAAGTCTCATATCGAAGTCAAGAATATGGAACTCGATGATGAACGACAGTTTCGGTAACTCGGACACGTGCTCAGGGAGGAATTGAGCAAGCCACCACACATTGCGCAGCAATATGTCAGTTCAGCATAAACGAAATGGGCGGAGGTTAAGATCGACAGGAGGGTCAAAATGCCGGAGACCTTAATTCGGAGTAGGCTGGTATATGCGGTCCAATGGGAGCGGTTTAAATGCGGCCTAAAGGAAGAAGTTGGACTCCATCAGGACGACAGTCTCTAGAGAAATGGTCGAGGGTGATTTTAAGTGCAAGGCATCACCCACGAGCCGCAATGCCGAAAGGCCTGAAAGCGTTGATTGGAGTTACGGCTACTTCAACCAGAAATTACTACAAATAGTAAAACGTCAACAATGTGAGACATTTGTGAACGCCAGCATGTGAAATACATGTGCTTTGTACCCATACCCTGTACCTTGCACACATAACGAGAATGCCAAATCTCAACGAACTGAAATAGAGGGTCGTCACCCCTGAATGTTGTTAAAAAAATACCAGATTATCCAGTAGAAGCAACTAGGATGAAATTTTAATGTCGATGAAGAGCAGGAGCGTCGAATAGTCTTAAACAGAAAAGAGCAAAATGCTTGGTTTGGCAGCTGAGAACCTCGACATTGTTATAACTGCCGACATGAAGTAACCCCCATCATGATGATGATGATGGTAATAGACGGACCAATCGGGAAAAATTATTATGATATGTAACACTTTACTCTTAAAATTTCAGGGTCAAGCAACAGACATAGCCATTCAAGCTGAGGAAATACTTAATTTGAAGAAGCTTATAAACAACATCTATGTTAAGCACACTGGTCAACCAATTGATGTAATAGGTGGGTTCAATAAAATAATTATTATTAACAACAAAACTAAAGTGAATGGCCCTTTTTGGATTAAGTCAAGGTAACTTTTCTGAAAAGCTACCTGTCAGTAAGAAGGGTCTTTCAACATAAGGGTTAACAGTTGATTTACTAAGGCGTTTTGGGAATATAATTTAAAACTAGTACTAGAAAGAATAATATTGTTTTGTTGTTGTACTTTTCTCGTTACTCTCCACAGAAAATGCGCTTGAAAGAGACAAATTTATGTCACCTGATGAGGCAAGAGCCTTTGGCTTGATTGACAGAGTTTTATCGCACCCCCCGTCTATGAACGACACGTCGTCAAGTGATGTGGTGGAGCCGGATAGTTGATGATGCATATTCGGTTTTTTTTCTAGCTCAGTTCGTTTTAACAGAGAAATGCTTTTGTGAGGCCACTTATAAAACAATGTAACATGGTGGTCAAAGGAGTGATGAAAACCTTTTAGCTAGCAAAATAAAATGTAAATGCTCTAACCTTTTGTCTATGTGTGCTTCTTCTCCTCTTAAAATTTTCTTTGAAAAAATGTTTCAAAATAGTTAAAAATCATACTTAAATACAAGCTTTGTTTGCCCGCTTTCCATTCCTGGTATCTTCTCGTAAGTTAACCTTTGCCTTTTAGATGGAATATATGATGGAAGAACGGTCCATTCATCCAAACCTAAAATATTTTTAGCTCGTTAGTGGCTGGTTGCATCAGTGTATGTTGAAGGACGAGGCTTTGATGGTTTGGGATATATCGGGATGTTACGTTTGTTTTCTTTTTACAGCTTGCTTATTGGCGAAATTCAAAGGTGATTGGTAAATTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88696	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Mus musculus OX=10090 GN=Clpp PE=1 SV=1
Q16740	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Homo sapiens OX=9606 GN=CLPP PE=1 SV=1
Q2KHU4	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Bos taurus OX=9913 GN=CLPP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00574 all species →	CLP_protease	Clp protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001907 all species →	Family	ATP-dependent Clp protease proteolytic subunit	Interproscan
IPR023562 all species →	Family	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR018215 all species →	Active_site	ClpP, Ser active site	Interproscan
IPR033135 all species →	Active_site	ClpP, histidine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10381 all species →	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0009368 all species →	Cellular Component	endopeptidase Clp complex	Interproscan
GO:0051117 all species →	Molecular Function	ATPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_004505-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.