Gene detail

Detailed information of FUN_004511-T3 in Acropora pulchra

Genomic Location: ntLink_8:23883293...23891505
NR annotation: XP_029184782.2, tyrosine-protein kinase SYK-like isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004511-T3

GAAATGTACCTCGTATTTCCGTCTGAAATCTGATTTCAGTATCTAAGAAAGCGTTCCGATGGCTATTTGTTGCACGGGGAATTGATAATGTCGTGGCCTTCATCATGAAAATGAAAGTTTTTGCAAGCAGCTGGTAAAAACAAGATTGATAATTATATGAGTGAGACAAAAATAAAACAGATGGCAGATCCTCTTTTCCAACATTGGTTTCATGGTCGTATAAGCCGTCAGGAAGCAGAAGACCTTCTTGCTCGTGCCGGCAAACACGATGGCTCGTATCTGTTGCGGGAGAGTACCGCTTCTGCTGGGAGCTATGCACTCTCTGTGTGCCATAATAACAAGATAATTCATTACCACATTCAGCGCCATTCAGATGGAATGGTGGCTATTGAAGATGGCGCAAGGTTTCTGGGACCAGTTGAACTTGTACATCATCATCAACATGCGTTAGATGGACTGCTGACCAAGCTAACTGAGCCTTGTAATCGACTTCCTGGTGTACCACCAAGGACATTTTCGGGTGCAAACCAAGAGCACATCAAGGATGCTGCCATTGCTGCCATTGCTTCTATGGGATTAGAGGAAGGTGATGAAAATACAGCAACTCTCATGAGGGCTAAACTGGAAAGTGCCATTGGCTCAGTCTTGCACAAGAACCAAGTATGGTTTCATGGTGGAATCCCTCGGGAAGAGGCTGAGCGTCGTTTGCAGGTCTTGGGATCTCAAGAAGGGATGTTCCTTATACGTGAAAAAGATCCAGGATTTGTGCTGGGTCTTGTCCATGATGGCTCTATGGTTCATTACTTGTTTGATGTAGATTCTCAGGGAAGATTATCCATCAAGTCTGGTCCCAAGTTTGACAACTTGATGTTGGCAGTTGACTACTATACACTGAGAGAAGATGGTCTCCTTTGCAAATTGCGTGAGCCCTGTAATGCTGAACTCTTTGATGGAAAAAGGAGGACTCCTTCGGTGGGATCACGACCTGTGGGTCTTTTTGACAATACTCAAAGGAGAACACCAAGTCAATCATTCACTGAAGGTAATCCTTTTCCAGGAAATCCATTCCTTCAGGGTGCAGCCTCACCAGCTGCTACGGTTCCAGATATACTACGTGAAGCTGTTCCTAGATGTCCTCCTCCAAGGGACCCTCCTCCACCTGTTCCTACTTCTCTTCCACCACCAGCAAGAGACAAAACCAGTGCTCGTCCACGCTTACCTCCCAGACCCCCTACTAGTCCAAGAAATGCATCCCCAGCAACATCCAGTTATCCAATGTCTGCCGAGGAAAATCAGGTTTTAGGAGCAACGCGCACAAGTCCTTCAAAAGGCTCACAGTTTGAGTCAATTTACGACAGTGTAAAAATGAGGAAAAGCTCTTTTTATTTCAATCAATTTAAAGATGTTCAAACTCACAAACTAAGGAGTGAAAATCTCAGTTTAGAGAGAGAACTGGGTCATGGGAACTTTGGATCAGTTCTTAAAGGAGAGTACATAAAGCAAAATGGAGAAAAGATTCCAGTTGCAGTGAAAAAACTAAAATCCGAAGAAATGAACAATCCAAAGTCTGAAATCATGCATGAAGCTGAAGTTATGATGAGGTTGGATCACCCAAACATTGTGAGAATTATAGGTACTTCTTACAAACTATCTAGCATCTAGTGCTTTGGATGAATTCTTGTCATGATATTAATGAATGATTGGTTCATCCATCAAGTTATGGATGCACATGGGAGGTTTCTATGCATAATACTGAAGAAAGGTCTAAGAGCTGCACAAGGGAATAGACCATTTAACAGTTGTGTGCTTAATTGCCTGGCCTTTGAATAAATAGTGTGGCTGATGTTGCCCTTGTTTTGATAGAAACCTCACTACTTTTCTTGTGTAAATTTCTAGTAATTAGCACAAGAACAGCATCATTAATTTACGAAAAGCAGAGAGGTTTCTCTCAAAACAGGGTCAAATCCAGTTTCACTTTCATTCAAAGGCCAGGCAACTAGGCAGACAATAATTGTAAAATGATCAATAATTGAGTGCTGTTTTAGCACCACTTATTATTGAACCACATTTAGCACCACTTATTATTGAACCACTTATTATTGTTTTATAACATTGACATAAATTTTATCAAATCTTCTCCAAACCAATTGAAAGCTTACAGAGCACACTGGTGATGTAAGCAAATTATTTTATTGGCTGAAATTGCGTGACTCTGGAATCTAATAATCTTTTAAAATGTATAAATAGCTCACCTAAACAACCAATAGTACCAATGAGCTTTGGTTTATACCTCCCCTAGGAAGTAGGATTATCCTCGGCCCAGCTGAATCTCTGTGTGGTTATACATGTACATCCTAGTACTCAGTACTGCTTATGATGTATGTGCACCCATAGAAAGTTATGCACCATACCTAAATTTTAGTTTAACCCTAGAGTTGATAGCTACAGTACAGTTGTAGGTACAAAATCAGAGCTTTTGAATATTGGTCTCTTTGTTAGGTATCTGTGAGGACTCAACAGTTATGCTTGTTATGGAATTAGCTCCTGAGGGTCCTCTCCATAAGTATCTCAAGAAACACAAGTATGAGAACATCTATTGTTTAATAATTAATATTACTGTGGGTTTTAATACCTGCAAGTTGTGTAATAAAGGCATGGTACTATGGCGTGTTTTAGTTGAAGCCGTTTAACTTGTCTTTAAGACACATGAAACAGAACATTAAAAAGTGCTTCCACTATAAATACTATGCAGTACTATGCATTTATTTACACACAACAGAGATGATTATGCACAACAGCAACCTTGGTTTTCGGCTATTTTATTTTCATGAATAGTTTCTGTGATTTTTTCTAGGAGTTTGCCAATGTTCAAGATATTTGTCATCATGTTGCAAGTAGCAGAGGTAAAACCTTGTTTCAAGATAATGTCAAGCTATTGAAAAACGGTTGAGAGATTCATGATAGGCATTTGTGTGTCTTACCACTTAATTTTTTTATATCATAGGGAATGCAATACCTTGAAAACATGCAGTTTGTGCATAGGGATCTTGCAGCCAGAAATGTGTTAGTCGTCAATGAGGACTTTGTGAAAATTAGTGACTTTGGAATGTCAAGAGCAATGGGGACAGGAACAGACTATTACAGGGTATCATAAAAATTTGATATCAAACCAGCTGAAAAGGGTCAAGAATCAACTGCAATATTACAAAGCTGATTTCTGTAGTGTTCTTAGTCAAAGTCAATTAGTACAGGGTATACAGTACTTACCAAGAAATCATTGACTGGCAACCTTTTCAAGCTTCAGATTATTTCAACTGGCGGGGAGATCGTTGGTTCTTGTCACATGTAGTCATTCTTCATCTTCTCAGCATGTGGAACTTTTGATTAGTGTTACTACAGAAGCCGGCCAGAGTAAATTTAATTTTTGGTAGGGATAAACCCATATATAGGTGCAGTTTTTAATTTTTTTTCTGTAAACACGTCTTCTTTTAATTCAGGCAATTGCTAAGCATAACCTCAGACCTGGCACTTTTCTTGATATCAGTAAGACCTCTAAATTTGTAGTTTTTCTTTTGTAGGCTGGTAAGCCTGGAAAATGGCCTCTTAAATGGTATGCTCCAGAGTGCATCTACTTCAGAAAGTTTAGTAGCAAGAGCGATGTGTGGAGTTATGGCGTCACATTTTGGGAGGCTGCCTCTTATGGGAAGAAACCTTATGATGTATGACTTTTTACATAATATGTTACTATTTTCTTTTGATCTCAGTAGTTAACCATAAACCCAAACGCACAATTTAATATTTTATTATTGCTGCCAGAATGGTCCAAAATAAGGTAGATGAAACCAAGTACTACAGCGTTGACACCTATTCCTGCACACAGGGTTCTCACGGAAAAATTAATGTTCTTCAATCATTTTCAGGGTCTTAATGGACAATATATCCTGGAACAAATAGAGAGCGGTTATAGACTAGAATGCCCAGAGGGTGTCCCGCAAGATGTGTACAAAATAATGAGAAGTTGTTGGGAATTCAGGTAAAGTAAGACTACAAGCTAGTGATAGAAACTTGCTTTAAATGAGTAAATACACCAGGGGCCTGTTTCTCGAAAGTCCCGAAATTTCTCCGGCGCATTTCGGGTGACATAATTCTCTCTGTATCTTCACAAAGAAGGCGTTTCGAGGCACGAAACTTTATTTTCTTGTTATTCCTTATATATATAAAAAGACCAGCTTTACAGAATAAGCAGGTCGGAGTTTAACGAATGGTTTTTCAGGCTCGAAAGGTTTTCGGACTTTCGAGAAACGGGCCCCAGCAGACCAAAAATTAATGCTTACCTTCGCCAATGTTTTCGTTCTTTTCTTTTCACTGCATGCGTGTTTCGAAGCTGTCTTATTTAGTTATTTCACTTTGCTTGGATATCAAATACAACGACAATGTTTACGCTAAATGTTTGTCGCAAAACGATGAATTCAATATTCCTCTCCCTTCAAAATTCAGATTAGTGAGGAGCCCGCTAGAAATGGCGGGAAAATCACGTTCATGTGGTTTGACCTGTTTTACGGGTTTACGGCAAATAGTCAGTCAGTTATCAAATACTATTGAAATAGGTCATTTTTTCATTGCCTTTCTTTTATTGACAGAGAGGAAGACAGACCGTCCTTTCAAGCTCTCTCCCAGGAACTTGGAAATGCATTTTATGAGCTAAAGAGTGTGAAGGGATACTAAGTTCCGTCTATTTGTCAAGTCAGAAATTGCCCTAGGGCCTAACCCATGGCATATCCACGAGCCTTAACTCTCTCCATTCTTTAGTGGTCTTAAAAGAAAGGAGAGGGGAGAGAAGAGCGCTAGATATCGAAATCCTCTTAAATTTAGTCTGCCTAATGGCAAGCGACACATTTTCCTACTTGGCCAAATAGTTCAGGTAAATTTAAATTATAATAAGTATAAAGAGAAGAAATCACAATTAATTAGAATATTACAATCGTATTGTTGGGTTGGACTGCGATGTTCATTATGATTATGACACCCCTTAGCTCTATATTGAAGCAGCTCCACAGCTCTTACTAAGTAAGCCTTCTTGGTTGCATATTTTACCTTTTTCAGTCTCAAACCTAAAGTGAGGCTTCTTTCGTACGCTTATCGGTTTTCGACAAGCAACTCGACTTTTCGCTAGCGGGGAATTTCCTCGCATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43405	Tyrosine-protein kinase SYK OS=Homo sapiens OX=9606 GN=SYK PE=1 SV=1
Q00655	Tyrosine-protein kinase SYK OS=Sus scrofa OX=9823 GN=SYK PE=1 SV=1
P53356	Tyrosine-protein kinase HTK16 OS=Hydra vulgaris OX=6087 GN=HTK16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004051 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_004511-T3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.