Gene detail

Detailed information of FUN_004531-T1 in Siderastrea siderea

Genomic Location: contig_3:15375994...15387809
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11543 all species →	UN_NPL4	Nuclear pore localisation protein NPL4	Family	Interproscan
PF05021 all species →	NPL4	NPL4 family	Family	Interproscan
PF05020 all species →	zf-NPL4	NPL4 family, putative zinc binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007717 all species →	Domain	Nuclear pore localisation protein NPL4, C-terminal	Interproscan
IPR016563 all species →	Family	Nuclear protein localization protein 4	Interproscan
IPR024682 all species →	Domain	Nuclear pore localisation protein Npl4, ubiquitin-like domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR007716 all species →	Domain	NPL4, zinc-binding putative	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12710 all species →	NUCLEAR PROTEIN LOCALIZATION 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14015	NPLOC4, NPL4; nuclear protein localization protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.