Detailed information of FUN_004845-T2 in Siderastrea siderea

Genomic Location: contig_3:19516133...19540772
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08366
all species →		LLGLLLGL2FamilyInterproscan
PF08596
all species →		Lgl_CLethal giant larvae(Lgl) like, C-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR013577
all species →		DomainLethal giant larvae homologue 2Interproscan
IPR013905
all species →		DomainLethal giant larvae (Lgl)-like, C-terminal domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR000664
all species →		FamilyLethal(2) giant larvae proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10241
all species →		LETHAL 2 GIANT LARVAE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0008593
all species →		Biological Processregulation of Notch signaling pathwayInterproscan
GO:0019905
all species →		Molecular Functionsyntaxin bindingInterproscan
GO:0030864
all species →		Cellular Componentcortical actin cytoskeletonInterproscan
GO:0030866
all species →		Biological Processcortical actin cytoskeleton organizationInterproscan
GO:0032878
all species →		Biological Processregulation of establishment or maintenance of cell polarityInterproscan
GO:0045159
all species →		Molecular Functionmyosin II bindingInterproscan
GO:0050708
all species →		Biological Processregulation of protein secretionInterproscan
GO:0051294
all species →		Biological Processestablishment of spindle orientationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06094LLGL; lethal(2) giant larvae protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_004845-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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