Gene detail

Detailed information of FUN_004974-T1 in Dendrogyra cylindrus

Genomic Location: contig_5:1770951...1779923
NR annotation: XP_027054458.1, eukaryotic translation initiation factor 2 subunit 1-like [Pocillopora damicornis]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_004974-T1

AGCGGCCACTCTATTGCATCAGTTTCTGCACATGGTGGATTTCTGAAATAATTTATATCTTGCCAGTTTCTATCGTCGTCAAAATGCCGATCAGCTGTAGATTCTACAAACACAAGTACCCAGAAATTGAAGATGTGGTCATGGTGAACGTGCGAAGCATCGCCGAGATGGGAGCTTACGTGAATTTACTGGAATACAACAACATCGAAGGAATGATTCTTCTGAGTGAATTGTCAAGAAGACGAATTCGTTCAATCAATAAGCTCATCAGAGTTGGAAGGAACGAATGTGTGGTGGTTATCCGTGTGGACAAGGACAAAGGATACATTGACTTGTCCAAAAGAAGAGTTTCACCAGAAGAAATCAAGAAATGCGAAATAAAGTACACAAAAGCAAAAACTGTGTACAGTATTTTGAGACACTGTGCGGAGATCTTGGGATACGAGACTGACAGAGAGCTGGAAGAACTGTATGAGAAGACTGCCTGGTATTTTGATGAGAAGTACAAATCACCAGGAAGTTCATATGAAATGTTTAAACTAGCAGTGGGAGATCCAGCAGTGCTTGATGAGTTGGATCTTGATGAGAAAACCAAATCCACTCTGCATTCTAACATCATGAGACGACTCACTCCTCAAGCTGTTAAGATTCGTGCCGACATTGAAGTGTCATGTTATGCTTATGATGGCATTGATGCTGTGAAAAACTCGTTGCTTGAAGGACTGAAGTGCACCTCAGAAGATGTTCCTATCAAGATAAATTTGATAGCAGCTCCACTGTATGtgataacaacaacaacgttGGATCGTGATGATGGACTCAAGGGCTTGACAAATGCCGTGGATGCCATTAGAACAACCATCAAGAAATATGGAGGAGAATTCAATGAAAAGGCTGCTCCTAAAGTGGTCACAGAAAGCGATGAGGCTGAACTTGCCAAACAAATGGAAAGATTGGAAAGAGAAAACGCTGAAGTGGACGGTGATGATGACAATCCTGACGAGGAGGAAATATCAGAAGACataaaaaatctttaaaaatccatAAAAGTTCTGCCATAACAAATATTATGTCATTTGTGTAATGAATATTGGACAAGTGACACAAACTTTACTAAGTATCCAACAGATTATAAGAGAGAACCATTAACCTACCTTTGCAGATGCTGCAGATCAAGGTTAAGCCACACCCCAAAAGTTGTTTCTTCTGTTCATCTCATCCTACATGTAGTACCTGGATTTGATCTACATGTACTGTATTCCTGTTGTCGTGTGGGGGGACACCTTTGGGACTTCTTTCACATGAGGTGTCCCCTTACTAAACTTACAAGTGTAGTGTAGTTGTTCAAATGACTGTCATAGGCAGGTACTGAAGTAATCACAGCACCAATTACAATGGCGACAAGAACCAAATATGTTGCATGTATAAATTTAAACTGGACATTACTATTCAGAGTTTTTGTTACCTTTTGCCATCTTCAAGTCATGGGAACAGGTACATGTTTTGGCATATATTTCCAGTTAAATATTGTTGAATTCTTGTTGTCTTTAGTACAAAATGTTTCGCTCTAATATGGCACATTTAGAACATCATAGTCAATTGTCGAACATGGAATTTAGCCCTTGACTGGTAATTTGTTCCCCTGACTACAACTTCTTGCAAGATGAGTGTCTCATCTCTTGATACATTGCATCTCTCGATACAGGAATCCTGTCTTGCAAGATGTTGTTCTTATGTTAAGAGAAGATGGTAACTTTTAAGCAGTACTGTACTTTGTCAAAAATGGCATCCAATGGCTACAAACTTGTCGTGTGACTGCCGTTATAAAAACACTTATAGACAGCTGCAACTAACCACATTGCAGATTAAGAGCAAAATGTTGCATATTAAAATTCTTCAATTTTGTTCAATGCTTATCTGCTAAAATAGCTGAAGTACCGGTAAaggcttttatttttgttttgcagtGTGTTTTGCTACTTGTTGTCCAAGTGAGCTTGTTGCAGATTTTTAGTTCATTCAGCAATCAACTTACAGAat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05198	Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens OX=9606 GN=EIF2S1 PE=1 SV=3
Q6GL89	Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis OX=8364 GN=eif2s1 PE=2 SV=1
Q5ZLX2	Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus OX=9031 GN=EIF2S1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007009 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF07541 all species →	EIF_2_alpha	Eukaryotic translation initiation factor 2 alpha subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR024054 all species →	Homologous_superfamily	Translation initiation factor 2, alpha subunit, middle domain superfamily	Interproscan
IPR044126 all species →	Domain	IF2a, S1-like domain	Interproscan
IPR024055 all species →	Homologous_superfamily	Translation initiation factor 2, alpha subunit, C-terminal	Interproscan
IPR011488 all species →	Family	Translation initiation factor 2, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10602 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005850 all species →	Cellular Component	eukaryotic translation initiation factor 2 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0033290 all species →	Cellular Component	eukaryotic 48S preinitiation complex	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03237	EIF2S1; translation initiation factor 2 subunit 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.