Gene detail

Detailed information of FUN_005018-T1 in Acropora pulchra

Genomic Location: ntLink_8:30072583...30091872
NR annotation: XP_029193410.2, LOW QUALITY PROTEIN: zinc finger RNA-binding protein-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_005018-T1

ATGGCGACGAGCAATTACTACGGCTATACTTCTGGAGGCCAACACTCTCAAGGTTTTACACAAGCTCAAAATCCGTCGATCCAGACTAGTTATGGAGCACCCCAGGCAACTACTGGTTATGGTGTTCAAGCCTCTACGCCTGCTGCGGCACATTATGTTCCGCAACAAACTCAAGCGCCGCGACAAGTTGTTCAAGCGCCATATTCCGCCGGCTCGACGGCAGCTTATGCACAACAAGGTTCCACCGCACAAGGAGGAGCTTATGGCTACACAGCAAGACAGCAAGATGCTCCTCCACCGCCTCCACCAGCAAACGCCGCCACTTATCAAACGACTCACAACGCTTATCAAACGCACCACACCACGGCACAGTACTACGACAGAGAAGCTTACGAAACGAAAGCAGCGGCGGCCGCTGCGGCTTCTTATTATACGCAACAACCTTCTTCGAATGTGCAAGGTGGACAGGGCGCTTACTACGCTCAGAACACCACCGCGGTAGCAAAAGCAGCTTATCCAACCTCTGGAGCAAGCGTTTATCCCACATCTGTCAGTGCAACAACGCCGGTGATCGCCAAAACACACCCGACTCAAGCTTATTCAGCGCAGACGTCTACTGTGGCTTATCCTTATTCCAATGCCCGCACCCAAACAACAGCATACGGGCAAACAAACTCGTACAACACGTCTAGTTACGGTGGTGCATCTGCCGGAAACGCCGGAGGTTACCAAACTCAAGCTTACGAGGCAGCAGTGTATAACGCTGCGGCAGCCTTTGTCCACCAACAACATCATCATCCGCAACCTCCGAGACAGGGTTGGAAAAACAAGATTGGCGCTGGGCAGCAAAAGCCACCGATGGGCATGATGAAGCCTAAGCCACCGCCCAAACAACCCCAGCTTCATTACTGTGATGTTTGCAAGATTAGCTGCGCTGGTCCACAAACTTACAGAGAGCATCTTGAGGGACAGAAGCATAAGAAGAAAGAACAGGCTGCCAAGCAGAAGGAGAAAGAATCGCTTCCATCCAATGCGTATCGTTGTGAGCTGTGCGATGTCACTTGCACAGGGACGGATGCCTATGCTGCACACTTGAAAGGATCAAAACATCAAAAGGTTGTTAAACTGCATCAAAAACTTGGGAAGCCGATTCCAGAGCCAAGCCCCTTGAAGCCCCCAGAAGCCAAGGACGCAACAAAAGAAAATGGAGACAAAAAGGCCGGTGCTGGAAACAAGGGCTCTCAACGGAAACCACCTGCTCGCAAAATAGCGTCTCCTAAGATAACTTTTATTGGTGGCACAAGACTGACTTCAACTGGACTTGTGAAGAGTGAAGCAGGTGGGTCACCTGGGGCTTTACCTGGCACTAACAATGCTGGATCAGTATCTGGGAATGAAGCAGAGATGGAAGAAGAAAAATTTGACTTGGCAAATTTCACTGGAGTGGACAAGAGCAAGATTGTTGGTGGAGAATACTTAGAGGAAATTAAGAATGAGGAGGGGAAGGTTGTTAGTTTCCACTGCAAACTGTGTGAATGCAAGTTCAATGATCCAAATGCAAAGGAGGCGCATTTGGCTGGACGACGTCATCGGTTGTCATACAAGAAAAAAGTTCAACCAGATCTTGTGGTTGATACTAAACCAAGTGGACGTAACCGTCTCAGTAAAGGGCAAGAAGACAAGTTTCGCCGACAGTGGGAACAAGAGCAGTACTGGCAATGGAAAAAGGGAAGACATGAGGAAGACTTGCGCCGATGGGAAGAAGAGGAATATTACAGGCGAATTGCAGAAGAGGAAAGGTTCTGGGAAGAGGAAAACCGCCGTCGATTTGAAGTGGAATTCTACGAGGGCTGGGGACCTGGCCGAATGGGGCCACCAAGAGGGCCGGGAGGACCTATGGGACCACGTCCTCTTATGGAGGGAGTTGGCGACATGCCACAGCCTGTGGGGCGACCAAGGTTTGATACACCTGACGACCGTCTAGTCATGGCCAAGCACTCTAGCATTTACCCCAATGAGCAGGAACTCCAGGCTGTACAGAAAATAGTTTCTGCTTCTGAGAAGGCTCTGAAGCTTGTCTCAGATCTGATTGCAGAGCAAGATTTGGCTGCAATGCCCAATAAAGATGTCAGTGAGGAGGTCAAAGAGGAAGTAAAAATGGAAGTAAAGGAAACAGAAGAAACCACTGAGGAAAAAACAGAAGCAAATGAAGAGAAGAAGGAACCAAACAAACCTGCTTCACCACCACGTGCCCTCAAAGGTGTCATGAGAGTTGGAGTGCTGGCAAAAGGCTTGCTGCTTCATGAGCGTCTTGACGTTAATTTGGTGGTTCTGTGCCATGACAAGCCAACCAAGATGTTAATAAAGAGGGTTGCTGACCTTTTGCCAGAACATCTTGCAAAGGTCACTGAAGAGAAATATGAAATCAAGACCGTGCTGGAGGAAGCTGCACTCAAAATTATTACTCCCGTGGATCCCAAGGTTGTTGTGACTATTACCCTGACGTCGCCAGTTATGCGCGAAGGAGAGGAGGCTGAACATGCTGAAGACGACCCTGAAGTCCTGGACAGGCCAAAATGCTTAGCTGCATTGGCATCGCTACGACATGCTAAGTGGTTTCAGGCAAAAGCCAACGGTTTGCAGTCCTGTGTCATCATTATACGCGTCATGCGTGATCTCTGTCAAAGGATTCCAGCTTTTGCCCCGCTTAATAATTGGGCCTTGGAGTTGCTGGTAGAGAAGGCCGTAAGCAGCAGCCAACAGCCCCTAGGACCTGGCGAAGCTTTCCGTCGTGTGTTGGAGTGTATTTCGAGTGGTCTTCTTTTGGAAGGAGGACCAGGCATTTGTGACCCCTGTGAAAAAGACACTGTGGATGCCTTGACCGAGGTTTCCATGCAAGAAAAAGAAGAACTCACGGCTTCGGCACAGCACGCCCTTCGCCTCACTGCATTCAGACAACTACACAAAGTTCTAGGCATTGATCCTTTGCCCGCCGGACCTAAGTTCCGACGAAACCGAGGGGGGAGGAGTTTCAAGAGAAGGCGCGAGGACAGCGGACAAGAGGAGGGCGCTAAGAAAGAAAAGAAAGAGGGAGAGGGGGAGGTTGTGGCAGAGGCGATGGAGGTGACCTCAGCGGGTGGTACTGAGGTTAAAACCGATGCTTGA

Transcript

FUN_005018-T1

TGATTTGACATCACAAACTGATTTACATTGCATTATCTCTTTGTAAACATGCATGCAAAGTAGATTGGGAAGTCAAATCAGGAACAGACCCACTCCCCTTCTGCCTTGGTTGTGAACAAAAGATGCTTGGTTTTTTCGCAATTTTTGAAGCCTATAAATTGGCAGCAATTGTTAGAAGAAGGGAAAAATGGCTGCAATGTGTTTCGAACAGGTGCTAAATAAGATTCATTTTAGTGGAAAAAATATTCTGGGGTTAGGGGCACTTTAACTCAAACTACACTGAACAAGTTGGTGTGTTTTATCAAAGTGATCAGAGCTAGTTTCTTGCCATATTTAGTGGAATTTTAATTTGACTGGTCTTTGCAAGAGTGACGGGTCAATGGATGGTTTTATATTTTTGAGGGCAGAAAGTGATATAGCGTAGTGTTTTTTTGTTTAATTCCAGTGCCTTATTTCGGCTTTTTTCAGTACCCTTCACTTCATTTATTTTTAAACCGATTAGATCTCCAAGTTTATTTCACGCAATGATGAGATGAATACTTTTATGTTGCATTTCTTGAAATTTTGTGCTCAGTGCGTGCCTACATAAAGCCTCTATTTCAAGGTAATCCCAGTCCCTCTAAATAGTCAGTAAAGCTTGAACACGTGCCCTCATTTTCTTTCAAACCATCATGGCGACGAGCAATTACTACGGCTATACTTCTGGAGGCCAACACTCTCAAGGTTTTACACAAGCTCAAAATCCGTCGATCCAGACTAGTTATGGAGCACCCCAGGCAACTACTGGTTATGGTGTTCAAGCCTCTACGCCTGCTGCGGCACATTATGTTCCGCAACAAACTCAAGCGCCGCGACAAGTTGTTCAAGCGCCATATTCCGCCGGCTCGACGGCAGCTTATGCACAACAAGGTTCCACCGCACAAGGAGGAGCTTATGGCTACACAGCAAGACAGCAAGATGCTCCTCCACCGCCTCCACCAGCAAACGCCGCCACTTATCAAACGACTCACAACGCTTATCAAACGCACCACACCACGGCACAGTACTACGACAGAGAAGCTTACGAAACGAAAGCAGCGGCGGCCGCTGCGGCTTCTTATTATACGCAACAACCTTCTTCGAATGTGCAAGGTGGACAGGGCGCTTACTACGCTCAGAACACCACCGCGGTAGCAAAAGCAGCTTATCCAACCTCTGGAGCAAGCGTTTATCCCACATCTGTCAGTGCAACAACGCCGGTGATCGCCAAAACACACCCGACTCAAGCTTATTCAGCGCAGACGTCTACTGTGGCTTATCCTTATTCCAATGCCCGCACCCAAACAACAGCATACGGGCAAACAAACTCGTACAACACGTCTAGTTACGGTGGTGCATCTGCCGGAAACGCCGGAGGTTACCAAACTCAAGCTTACGAGGCAGCAGTGTATAACGCTGCGGCAGCCTTTGTCCACCAACAACATCATCATCCGCAACCTCCGAGACAGGGTTGGAAAAACAAGATTGGCGCTGGGCAGCAAAAGCCACCGATGGGCATGATGAAGCCTAAGCCACCGCCCAAACAACCCCAGCTTCATTACTGTGATGTTTGCAAGATTAGCTGCGCTGGTCCACAAACTTACAGAGAGCATCTTGAGGGACAGAAGCATAAGAAGAAAGAACAGGCTGCCAAGCAGAAGGAGAAAGAATCGCTTCCATCCAATGCGTATCGTTGTGAGCTGTGCGATGTCACTTGCACAGGGACGGATGCCTATGCTGCACACTTGAAAGGATCAAAACATCAAAAGGTTGTTAAACTGCATCAAAAACTTGGGAAGCCGATTCCAGAGCCAAGCCCCTTGAAGCCCCCAGAAGCCAAGGACGCAACAAAAGAAAATGGAGACAAAAAGGCCGGTGCTGGAAACAAGGGCTCTCAACGGAAACCACCTGCTCGCAAAATAGCGTCTCCTAAGATAACTTTTATTGGTGGCACAAGACTGACTTCAACTGGACTTGTGAAGAGTGAAGCAGGTGGGTCACCTGGGGCTTTACCTGGCACTAACAATGCTGGATCAGTATCTGGGAATGAAGCAGAGATGGAAGAAGAAAAATTTGACTTGGCAAATTTCACTGGAGTGGACAAGAGCAAGATTGTTGGTGGAGAATACTTAGAGGAAATTAAGAATGAGGAGGGGAAGGTTGTTAGTTTCCACTGCAAACTGTGTGAATGCAAGTTCAATGATCCAAATGCAAAGGAGGCGCATTTGGCTGGACGACGTCATCGGTTGTCATACAAGAAAAAAGTTCAACCAGATCTTGTGGTTGATACTAAACCAAGTGGACGTAACCGTCTCAGTAAAGGGCAAGAAGACAAGTTTCGCCGACAGTGGGAACAAGAGCAGTACTGGCAATGGAAAAAGGGAAGACATGAGGAAGACTTGCGCCGATGGGAAGAAGAGGAATATTACAGGCGAATTGCAGAAGAGGAAAGGTTCTGGGAAGAGGAAAACCGCCGTCGATTTGAAGTGGAATTCTACGAGGGCTGGGGACCTGGCCGAATGGGGCCACCAAGAGGGCCGGGAGGACCTATGGGACCACGTCCTCTTATGGAGGGAGTTGGCGACATGCCACAGCCTGTGGGGCGACCAAGGTTTGATACACCTGACGACCGTCTAGTCATGGCCAAGCACTCTAGCATTTACCCCAATGAGCAGGAACTCCAGGCTGTACAGAAAATAGTTTCTGCTTCTGAGAAGGCTCTGAAGCTTGTCTCAGATCTGATTGCAGAGCAAGATTTGGCTGCAATGCCCAATAAAGATGTCAGTGAGGAGGTCAAAGAGGAAGTAAAAATGGAAGTAAAGGAAACAGAAGAAACCACTGAGGAAAAAACAGAAGCAAATGAAGAGAAGAAGGAACCAAACAAACCTGCTTCACCACCACGTGCCCTCAAAGGTGTCATGAGAGTTGGAGTGCTGGCAAAAGGCTTGCTGCTTCATGAGCGTCTTGACGTTAATTTGGTGGTTCTGTGCCATGACAAGCCAACCAAGATGTTAATAAAGAGGGTTGCTGACCTTTTGCCAGAACATCTTGCAAAGGTCACTGAAGAGAAATATGAAATCAAGACCGTGCTGGAGGAAGCTGCACTCAAAATTATTACTCCCGTGGATCCCAAGGTTGTTGTGACTATTACCCTGACGTCGCCAGTTATGCGCGAAGGAGAGGAGGCTGAACATGCTGAAGACGACCCTGAAGTCCTGGACAGGCCAAAATGCTTAGCTGCATTGGCATCGCTACGACATGCTAAGTGGTTTCAGGCAAAAGCCAACGGTTTGCAGTCCTGTGTCATCATTATACGCGTCATGCGTGATCTCTGTCAAAGGATTCCAGCTTTTGCCCCGCTTAATAATTGGGCCTTGGAGTTGCTGGTAGAGAAGGCCGTAAGCAGCAGCCAACAGCCCCTAGGACCTGGCGAAGCTTTCCGTCGTGTGTTGGAGTGTATTTCGAGTGGTCTTCTTTTGGAAGGAGGACCAGGCATTTGTGACCCCTGTGAAAAAGACACTGTGGATGCCTTGACCGAGGTTTCCATGCAAGAAAAAGAAGAACTCACGGCTTCGGCACAGCACGCCCTTCGCCTCACTGCATTCAGACAACTACACAAAGTTCTAGGCATTGATCCTTTGCCCGCCGGACCTAAGTTCCGACGAAACCGAGGGGGGAGGAGTTTCAAGAGAAGGCGCGAGGACAGCGGACAAGAGGAGGGCGCTAAGAAAGAAAAGAAAGAGGGAGAGGGGGAGGTTGTGGCAGAGGCGATGGAGGTGACCTCAGCGGGTGGTACTGAGGTTAAAACCGATGCTTGAGACCCTCAGTTCAGTGGTGCACTTAGGGGGCCTATCACGCCATTCAGTGTTCGCAGGAATTTGCCGTCAAACTTGGCTGATATTTTAGCGTTGTTTTAAATGATATGTGCTTATCAAAGCCCCTCGAGATTATAAGTAGCTTTATTTCACAGTGGTCTGTTGTTGTTAGTTCTCGAGGTTTAACATTTAGTTGGAAAATTTAGTGATGGGAAGAAGCAATGCTTCTTTTCTCACCTTGCCATCGTGAGAGTCATGGAATGAAAATCTTAAAACAACGACTTGAGAGAAAATTAATTAAAACTAATATCTTGATGGAAGACCGCTGCGTATTTCCCTTTTCGTTTACAACCGTGCGGCTAAAAATTAATACAGATCCCTCTTTTGCAGTTGTTTTTATTGTTCTTTAGTAGCCGTTGACTAATCAAATGAGGTCAAAGGTTGAAATCTGGAAAGTTGTGTTCCCAGTGAGCTGTGCCAATGCGAGCAATCTACTCGGATTTAAAGACTTATTTGAAATGTCTATCTTAGTTTTGGAGTTTTAATTGCCACTGCAGAGGCAAGAGCATGCGTCTTGCTAGTTGTCTACCCTCTCTGTCGGCCGAGCGATGCACACAGAGGGCTTGATAATTGTCATAGAATTTCTCTCTTTCGCTTCTTCATGGAAGTCAAACCAATTCTTGACATTCCCAATTCCCTTAAGACAGGATGTGGCCATGTTCTTGATTTCATCTGGGGGAAGAACGCTGTCCCAAAGGTTGTACCAGCTCATCTGATAAGCTGCATCCTCTGTAGTACCGGCGATGCTGAGGATTCCTCCTCCCGGAATATCGACTGCTAAGCCAATCTGCGATTTGACTTTATTCCCGTCAAAGTAATGTGAGAAGAGGCCGCTTTTACCGTTAAATGTCAGGCAGTAGTGATGCCATTCCAAATCGTCCATGTAATCTTTATAATTAAGCCTGTAAATGCAAAACATGCTTTCGTTTAGCCTAAGGTAAAGCAGAGAATCTCTGGGGTCCGACATAAGTTTGGTGAGATTTGGGTTAATGAGCTCTCTAGTGAGCTGAAGTAGTGATGCTTACGAGTCACGGACAGCAACCGGAAGAGACATGTTTACCTGTTTGACTTGTGTTCACATTTATATTATGTATATCTTCACTAGTTGTGACGATTAGCTTAACATCTGGGCGAGACAATTGTCCTGGCATGCGAGGGTTTCCGTCTGCGGCTTGAAAGTAAAATGTAAATTTCCATCTGAAAAGCAGTCTGAGCAAGCTGACTTAAAATTCCACTATGTCTTACAACAGTAATGCTAAATTTTTTTGCCTTCTTTTTTTTTTTTGGACTGACTTAATATCAATAAAACATGAGTTAGTATGTCACAAAATGTAATAACGAATGAACAGTAGTTAGTACCAAAGCCATGAGCAAATTTACCTATCTGGTCACATGACATTTTAAACAGCGGTGGAGCTAGGTTCACTGGATGGGAGTGCTCATCATAAGAGGGGGGAGGAACAGAATAGGAGGAGGGAGAAAAAAGTTGGGAGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88532	Zinc finger RNA-binding protein OS=Mus musculus OX=10090 GN=Zfr PE=1 SV=2
Q5REX3	Zinc finger RNA-binding protein OS=Pongo abelii OX=9601 GN=ZFR PE=2 SV=1
Q96KR1	Zinc finger RNA-binding protein OS=Homo sapiens OX=9606 GN=ZFR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF20965 all species →	DZF_C	DZF C-terminal domain	Domain	Interproscan
PF07528 all species →	DZF_N	DZF N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006561 all species →	Domain	DZF domain	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR049402 all species →	Domain	DZF domain, C-terminal	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR049401 all species →	Domain	DZF domain, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45762 all species →	ZINC FINGER RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13203	ZFR; zinc finger RNA-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.