Gene detail

Detailed information of FUN_005029-T4 in Acropora pulchra

Genomic Location: ntLink_8:30188146...30195621
NR annotation: XP_015751370.1, PREDICTED: synaptotagmin-7-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005029-T4

CCGCTCGCCATGTTAAAATGGCGTCAGTCTATAGTTTCTTCAAGCATGACGCTACCAACGTTTCGAGGTAAGAAACGCTTCATTTGACACACTAGAAAACTGAAGAGTGCTTGAACAGATCTTAACGAACGCTTGCTGTTCCAGGTGACAACAAATGGGCGAGCGCAACAAAGAACTTTATATTCTAATACGTGTAACGAACAATCGTTTCCAATAGTTTTGATCGAAAATTCTTTTGAAGTTCAGCCATGAACAATTTTGCTTCTCAGAAACTTTGCATGGTGTCTGAGTGTCAACAAGTTAATTCGCCCATTTGAAGAGGGTTTTCTTTGTTGTCTCTTATGAGTTTGTGTTCTATTGATCGTACGGTCAACTGTAAACAACAGCTATTTTCTCACGAGAATTCATTTTTTAATTCACCTACTATTGAAGAGAAGCAGTGATAACTCAAATCACGTTTGAACAAAATTAATGATAGTTACTTAAAAGATCAAAGATTATAAGTAAATGGGAAATTTCCGCACAAACCAAAACTTGTGGTTGTGTCCAATGCAAGTGGCTAACAGCCTGGTTTCCATATCGTTGTATCTGTCGTATCTGTTGTGTCTGTCGTACGAAAAAAATTCATAGGACAGATAGAATTCATTCTATCTCGTACAACACGTTGTATCTGTCATTTCTATTGTATTGAGCAGTTGTACGGGAGGTTTCCATAAAGTTGTATCTGTCCAGGCTTAAACTACCACTGCTGAGGAAATGTTTGCATTCCCACAACTTGAGTTACGTAGAAGGCTTTGTATGTTCATCTTTTTGCTACATAAGTTACGTAGAAGCATTCAAGTTCAAGGTGAAAACTTGCATCACTGATATTGCACTTTCCCAATCACGATTTCATATTGCGTATGCGCAGGTGAGAAACATGAATCTCAAACAGTTGGCTTTGCAACGGAATTACATGCAAAAAGCGGACAATTGCAGTTTCTCAGATGTAGGATGATATATAGACCTCCTAACGGAAAGGGGAGCTACCTTGCTCTTCTGGGAAACATGTTCATTCTCCCCTTTTCTGTTTAAATCGTTTTTTTTCTTTTCCTAGTTTCTTTTTTTATTCCTTGTTTCTCTGTTCCACAAGGAGTTTGGTACGTGTTTATTCTTTTTTCCTCCGTCAAATGTCGATCGATCAATCTTTCAATATGAGTTAGCTATGTTCTTCTTTATTCATTTGTCTCCCAAAATTCAAGTAATTGTTATTCGTAATTGTAATAAACTGTCTTGCTAAATCAGAGGCTATAAAAATAGCGTGCAATTCATGATTTATTGACGGCGGGATATTTTTTTGCTCCAATTTTATCAAGTTGAACCGGTCGTTTGAAGTCGCAGTAGCTATTTTTAAACGATATTTTGTGTAAAAATGTAATAGGTCCACGGTATAATGAATGATTTGCGCTTTCTCTCACTTGTCCTCCACCTGTATAGACTGCTACAAAAACAAGCCGTCCAAAACTACAACAAACAACGTACACGTCGATCTTTTCTTATGCAAATCATGGCAGTCAAATTAATTTATTCAACAAGGCTAAACACAGGACGGAGCGAACTTCGTGAAATTATGGCAGGCTAAAGGTAAATACCACAGGTGTACTCAAAACTTGTTTTCATCTTTGAAATGACGGCAGATGAATCTAGAGCTGATGAAAACGATTTCGCCCGAAGCTCAAGGCTTCACTCTGTAATCGTTGTGACGACAGACAAGTCCAATGTATGCTTTTAGAAAGGTTCACAATGGCGCCCAGTTATCCCATCCTACAACATCATCCCAAAACGCTGTTAGCTAAAAATAAGAACAGCATTGTCAAACGTGATTTCGACCCCCACAAGAAACCACCGTCGTCTAACTCTCTGACGCGTTTCGCATCCAACAATACCGGGTTACTATGTCTGTTTGGTATTTTAATGTTTCCCGTTTTACTGGGACTTGCGGTCGGTTATGGCCTTGTTGTACTCGGTATCGGTGCGTACAAGAAAATGAAAGCCGAAAAGTCCAAAACGAACGCAACGACAGAAGCTCAAAAAATTCAAGTTGTGCTGGGTGACAGAATTGTCGATTCTTCGTTTCCAAAAACCGTTTCTCTAAACGTTCAAGAAACCAAAAATCGCAGCTTTTCAGGTTCATCTGCTCCGAGGTACTACTATCATCGTTTGTGCAACTTTTCCGACGAACTTGTGAACAGTGACGGCAAGAAAAACTTTGATGAGAGTTCCATTTCAGAGGATGACATGGACAACCGATCACGTGACAAATCGCAAGCAGGTGCAAAGAATGTTGAGGAGTCTGACTCGAGCACGCATGCGTCACTCGAAGACAATTTGGATAAGACGGAAGACGAAGGTGAAAAGGAACTGGAGAGTCCGAAAAGTGACTTGCCGAGTTGTGGGGCATCTAGCGAGGATAATAGTCCGGTAAAAGAGAGCAAGGCAAGTAAACCAAGCACACCAGAGAAAAAGCACTTGAACTTGCTTGAGGCAAACTCAAATGGTTCAGCTCTTAAAGGCATTGGCTTGATAGAGGAAGACAAAGTTTCGTCGCCGGACAACACCGATGAAAATCGAGGGAGGATTCGATTTGCGTTGCATTATAACGTCGCTAAAACCGAGCTTCAAGTGAACATTATAAAAGCGATCAATCTTCCAATAACTGACAATAAACAAGGTATTAACCCAATGGTGAAACTGTCTCTGCTCCCACAGCAGTTTTGCTGGCAAAGGACGAAAATTGTCGATGGAACGCCAGACCCTATTTTTAATGAGACTTTCGTCATCTCCGGTTTTTCAAAGGACAGAATTCAAGATTACGAGCTCAAATTTAGAGTTGTGAATTTTCAGGACACTTTTAAAGAGCGTTATGGTGATGACGTCATTGGCGAGATTCTGTTTCCGTTGTCGGAGCTGAAATTGACGGAGAACAGCGCCTCATTTTCGATCACCAAGTGGCTATACCTCAACCCACCCATCCCTCTGGCGGTAAGTAGGTTCAATTGGCCAGAGTAACTTACGCCTGCACAATGATTCCTTGTTGAATAGCGTCTTTTGCTCTGACAAAACGTAGTCATTGCGGAATTCCGTAATTGAGAAATCTCTATCTGCAATGTAATGCAGCCCACCAGTTTCTGGTACCATCTGTGCTTAGAAAGATTTTTGGTCAGGTTAAGTGCATTTATCATTGCCACTTCTTCGTTTTTGCTTTTGAAAAAACGACACTATAAGTGGGGTTTGCCAAAACCCGTCCTGGCAAGTATCAGCTAGACCATGCTGATGAGGCCAAAGAAGGCCGTAAAAGCTATACATGGTTGCCTGAAACCTGCTCGGGTGGTATCGCTCAGCGCATGCGTAGGGTGATGGGCCTTTCACAGACTTTCACTTTCCCATTAGCCTCCTCTTCATGCAGCCTTAAACAAAAGAGGTTTCGCCTCACGACCCAAGTGCAGTAACAGCTTTTGTAGATGCTGGATTTCCGTTATTGTTCACTAGGACCATGAGGATATTCCCGCCTCTTTGCAAAGTTGCTCTTTTCCTAAGCTAACAAGTTAATCAAGATTCCCCAGATCATGGCGAAAGGAGTCATAGCTGTCGCAGGTTACTGAGCACTTTTTATTTTTCAGGCGGAGGCGGGTGATCTCGGAGAGCTTTGTGTCTCTTTATGTTTTCGACCAATCAGCGGCCGTCTTATTGTGACTATCACAAAGATCCGTGGACTTCCAAAAGTAGCCGCTGACCGTACGGGTATGTGGGCCATTTTGCTTTGTTTGATTGTTCGTTTGTGTTTTTTCATTAAAAAAGAAAAGTCGACCATAACTTGGGAGCATACGCGTAAATTTCCTGATCGGTTTTCACGAAAGATAGCTAAAAGATTTAAAAGAAAAAACGAGACAGCTTATGCCTTTCACCGCACATTTAACGATGGTGTTTCCATGTTTGCCGCTGTGATAAGGGCATTTGCCTTCCAACAATTTATTCCGGGTTCAATTCTCAGACTCGTTGTCGGAAGAGTTAAGAAGATTGTTCACTCCCTATCGTGCTGCGCGAGGATTTTGCCTCTTTAATTTGATTTTCACTTTGGTTCAAAAGGCTGAATCTTGTTTTGATGAGAGTTTAGTAATTTGACTTGCAGCGGGCCTCAGACAGTGTTGAGTACCATTTCAGTGTTACCGAAGTTGACACCGTACACACTAAAATAAATCTAGTTAGTTAGCTCTGCGTTTCAAAATGACTAGCTATGATAAAATGGTGTTTATTTTCCAGCAACTACGGCACTTATAGCTCCGTTGTACCGTCTTTCAGTCGTATTGTTAACAGCAAATCCCGACTGTTCTCCGACGTTTACCGAACTGATTATTAAACTGACTCAATCGTGTGCGGTAGCTCGAAATATTCCGTTATCTTTGTCGGTGTCCGGAGTTAAGCGTTAGCCGAGTGACAACAAAAGAGGAAAACGACAGACTTTGCGTTTTAACGATTTCAAAGACTGTTCAAATGATTTCTTCGTTCGGTTTTATCTAGACCCTTATGTCAAGCTCGCCTTGTACTGTGACGGTGTACGCATGTCTAAAGCCAACACGCGCGTCAAGCGTAGGAGCCTCAATCCCGTGTACAACGAGAAGTTCAATTTCAATGTGTCCGCTGACCAGATATCTCTGACCACCATAGTGCTCAAGATTGTCAATCATTCGGAGATCAACAATGGTGGTGGAAGCCTGGGCGCTGTTATTCTTGGTTTTGATTCACTAGGGTCGGGGCAAGAGCAGTGGAAGTCCATGATCGAGTCACCGAGTAGACATGTCGAAAAATGGCACAAGCTCCAAAAGGATTTTTGTTGACTAGGGTTCTGTAATTGTGGACAACGATAATAGCGCCGAAAATAATGATTGAGGTTTTCAGGTGTGTGTGCAAAATGCGAACCAACCTTATCACATGTCCCTTGGGTTTCATACTCGACCAGAAGCCTTAACTTCCAAGCGCGCAGAAATTCAGTGTCATGGTATCGCAAATTTGCCAAAGTCCCTATTACAAGGTAGAATCACTGGATTGAGGCTTTCACGCGTGTGTTCAGGTGTAAATCAGCTTTTCCAGGTGTCCTCTTGGTTTTGCACCAAACCTTTGGCCATAAATTTCAAGGTCTCAGTAATTATAGTGTCCCAGTTTGCTATTATCTCTCTATTTCAAAACGAGATGAATTTCTCCTCGTAGACTCAAAACCCTTGATGAGAGCTTGATGGATTTAACCCGACCTCATCACTCCCCTTTCTTTCCCTGTTTTTCAAACTGGTATCCCTTCGTAACGCGCAGGATTTAAATGTAAACGAAGTCGCACTGCAGACCTATGTATGACGCAGCTGAGTTGCAAGCTGATAAGTCTACTGCTGGTCAAGCGAATTGGCATCAAGATTTCTTCTTCGCGTGTGATTGACTAAAGAAAACGTGTGTCCTTAGCGTGTATTAAAGCACAAAAGGACTTCAGGATAAATAAAATATTGAATGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40749	Synaptotagmin-4 OS=Mus musculus OX=10090 GN=Syt4 PE=1 SV=2
Q9H2B2	Synaptotagmin-4 OS=Homo sapiens OX=9606 GN=SYT4 PE=1 SV=1
P50232	Synaptotagmin-4 OS=Rattus norvegicus OX=10116 GN=Syt4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007146 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10024 all species →	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0001786 all species →	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0014059 all species →	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158 all species →	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0048791 all species →	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_005029-T4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.