Gene detail

Detailed information of FUN_005121-T1 in Acropora pulchra

Genomic Location: ntLink_8:31317194...31324287
NR annotation: XP_029192311.2, 46 kDa FK506-binding nuclear protein-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005121-T1

CCTAACTACCAACTTGTCCAGTTTTATTTTTTATGAAAGCAGTGTTTATTTCTTCGTTTCTTGTCTTCTGATCTGCTTTCAAAGATGTTTTGGGGTGTCACGCTTGATTCTGGCAAGCGATACACCCAAACAGTGGAAAAGTCCTTTCACTTATCAATGGCTGCATTGGGCTTTCAGAACTCTTCCACATCTCCAGTTACAGTCATGGCTGAAGTCGACAAAGCGCAGTTTGCGTTATGCACGTTACAACCTGGTAAAATTCCTCAGCAACCTTTGGATTATTGTTTTACTGAGGGAGAAGAGATCACATTTTTTATGGAAGGTTCAGGAGATGTCCACTTGACAGGATATTTGATGGAGGAACCAAATACTTTGGAATTTGAGGAAGATGAAGAGACGACAGCGGACAGCGATGAATCAACAGAATCTGCTTCAGATGCAAATACTGGAGATGAATCACTCAGTGATGAAATGACATTTAGTAGTCTACTTCAAAGCAAAGAAATTATAAACAATAGCAATGAGGAGGACAGTGAAGAAGACAGTGATGATGATGATTGGGATCCATCACAGGATAATCCAAAGCGGAGGAAGAGGACTGAAAAGGATAAGCAGAAGAAAAAGAATCAAAAGAAAATACAAAGTGAAAAAACTGGACGGAAAAAGGCAAAGCAAAGTGAACAAAAGCAAGGATATTTAAATTCAGCCAGTGCTGTAGTTGGTGCTGGCAATGAAAATGATATTGCTGATGGTGATGAATCTTGGACCCCAGAAGAGACAGTTGAAACAAAGGTTAAAAAAAAGAAGTTAAAAATCAAAAAGAAGAAACAAACTGATAGCGGGGAAAGTACAGAGATAAAAACTGAAACACCAAAAAAGAAAGTTAAGAAAAAAATGGAAGAAAATAAGAAAAAAAATGAAAGGGAAGAGAGTGGAAGTGTTGGTGATGATGATATGGAAAGTTTGGATAATGTTTCCAGCACAGCAAAAGACACTTTAGACTCTACTATTGAGTCCGAGAAAAAGGGACCTGGCAAACATGCAAATCTTGGAGTTCAAGAAAGTCCTGCTGCCAAGAGAAACCAATCTCAAGCCACTGAGACGAAAAAGAGAAAAATTCCAGGAGGTATAGTAATTGAAGATTTGAAGAAAGGAGCTGGACCCATGGCAAAAAATGGGCAGAAGGTTCATGTATATTATAAGGGCAATTTAGCAAAAAACAGCAAACAGTTTGATGCATGTTTGAAAGGTTCTCCATTTTCCTTCCAACTGGGTGCCGGAGAGGTGATCAAAGGCTGGGATCTAGGTGTAGTTGGTATGCAAGTTGGAGGAAAAAGAAAACTTAGAATACCCCCCTCAAAAGGGTATGGCAATAAACAGATGGGACCAATACCACCAAACAGTACTTTAGAATTTGAGATTCAGTTGATGCGAATACAATGATAACAGTAATCTTTGTTTTGATTAAATTTTAAAACCAAATAATTATTTACTTCTGGAAAAGGACATAACGTCTTCTGCTTAGCATGTAGCTGGTGGCTTTGTTGGTTGGAATTCAATTTTGTGACAAAAATTAGCAAAAAGAGACAAATTATTTTTTGAGGCCATCATCACCACTCTTGTTGACATCATAATTATCACTGCTGCGTAATTTTCTTTGTGAAAACAATCTTCTTGGAGTGTAATCCCTGCTAAAAGACTGAGGTTAGAACAGAAGAGGGAGAAGGTGGTTTTCCACTTCTACTCTTCACATTACATTCCAACCATCAGCCTATGTTATAATGAAAAGCAATTTTAACCAAAATAGTATGAATCATGGTTGCCACAGTTTTACTTCTAAACTTTCTGTTAATTTCATGTACACTTTTGATATTTATTGCTTACCGGTACTTTGAATTTGTATAATTCTTGCATATTAATTTTTGTTTGAAGAACTTGGGTGTCTTATGCATTTTTGTGCATGTGTAATATTCACCGAAGTTTTGTTTTACAAAGTGATTTTAAATAGAATAACAAAGACCACAGCCTTATACATTAAATTTAATGAGAAATGGGTTTGAAATAAATATTATATAGTTTACCAAAGAGCCAGTTGGTGTCCAATTCAGTTTCTTTTCCAGCTTGAAAGCAATGTAAAAATTTTCAAGTCATAAAAAAGGGTACAACAACTTTCCAGTTTTAAACACCTGTCATTTTAACATACTAGCCTTGTCGTTTTACTCAAGTTAGATCTTGTTGCTTCAATCAAGGTGAAATGCAAGCTTGAGAATTAGGCAACAGGGGCTACATTGAAAACGATATTAAAATGACAGCCATTCGTGAATGTGTGTTAATAAAGCCAGAATTGCTTGTGACACATATTTTGTCAATGGTTAAACATAGTGAAACCTGATATACAGTAATAGACCAATAAAGTGAAGGTATAGAAAGTGGTAGGTTCAAGTCATCGCTGTCCTTGTGTGGGCCCATTTTTGGTAACAAAACAGTGGGAAATATACTTGCACTTCATTGTTCCCTCTGATGGTCTAGTCTATTGATTTTTTTGTGCTGCACATCCAACTTAAAACCAGACATTACTGGCTGAAAATTGTTTAAACTTTCACTAACTCTACTTGCGTGAAAAGTATTTTTTTAAATAATTGCTTTATTTTAACCACTGCAACTGATGCTTAATGAAATTCCAGTACATCGAAGTACACTAGCAATCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q26486	46 kDa FK506-binding nuclear protein OS=Spodoptera frugiperda OX=7108 GN=FKBP46 PE=2 SV=1
P0CP99	FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=FPR4 PE=3 SV=1
P0CP98	FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=FPR4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF17800 all species →	NPL	Nucleoplasmin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR036824 all species →	Homologous_superfamily	Nucleoplasmin core domain superfamily	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR041232 all species →	Domain	Nucleoplasmin-like domain	Interproscan
IPR023566 all species →	Family	Peptidyl-prolyl cis-trans isomerase Fpr3/Fpr4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43811 all species →	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14826	FPR3_4; FK506-binding nuclear protein	EC:5.2.1.8	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.