Gene detail

Detailed information of FUN_005174-T2 in Acropora pulchra

Genomic Location: ntLink_8:32110513...32138124
NR annotation: XP_015760843.1, PREDICTED: MAU2 chromatid cohesion factor homolog [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005174-T2

AAGTTATCCATATTTCAGTTAAAAAGGAAGTTTCGCGTTAGTTGAAAGCACAATAACACTCGCTTTTAGCGTTCTTACGAAGTTTGACATTAAATTTCTCGAGAATGCTTGGGGATTTCATCCCGGGGTCACTTAGAGAACTGAATCACAATTAGATGTTTTAAATAGCATTCAAGAAGTTACCGTGCTGTGAGTAGATTTTTAGTAAATAATTTTTGCAAGTATTGCTCGAACTTTGAACAGAATCCGTCTTAAAAAATTAAGAGCCTATTCGTTTGGGGAGTTTTTTTTATGAGTAAGCCGGGCAAATCAGACTTGACATGGACAAGAAAGAAATCCTTCTGTAGCGATGCAAGCTTGTACGAATTTACAACTTGGAAAGCTTCTTTTCGTCCACACGAAAAATATCGATTTGGCTCGATCACATTTAGAAAAGTCGGTGATGCAAGCGCAGACTGTATCCTTTTTGTGGTGTAAAAAGCACACCAGATATAAAAATAATTAATATTAATTCTCTCAAAGCTGATCGATGCCTCTTTTTTTCATGTTTCAGTTATGAAGAAAATATTAACCTAGACTTAGCATGCAATTTAGCTTCAGGGAAAATATGGAAAGCTCAGTCTTTGTTTCCTTAACTCTTTCTTAATTGTTAGTTTGGTACTGGATTTGAAGAAATTCGTTTGGAAGCAATGTGTATATTAGGAGATATTTTCAAGGAACAGGGCCAATTTCACCTCTCAAAGTCTACTTTGCGTCAAGCACTTGAAGTTGCCCATGCTGGCAGTCTTCCTTTCTGGCAATTTAAAATCACTTTTCAGTTAGCGGATGTCCATGCAAATGATAAAGAACTGAAGGCAGCTACAGAGGTTCTTGAAATGGGAGAGAGATTTGCTGAGCAGTGTGGATCTCATTACATGAAGTGCTTGTTTTCACTAAGCAGAGCTATGGCATTTATGATGATGAATGAAGTCAACCATGCCACTGGCATCTTGTCAATGATTTCAAATTTTCTGGAGAGGTGGAATGTATCCAGCTATCAGCGAGAATCAATCCAGGTGTTTTATTTACTCCTCAAAGTGTGGAACTTTTTAACACTGGGACAGGCAAAGAGTGTGAGACCTCACTTAAAACAACTTCAGCAGTCAATACAGATATTGACAACCTTACAAATGGATGAATCCCAGGTACATGAAGCTGAGCAATTTGAATGGCTCACAAGGGAGCATTTATGCGTCTTAGTTTATTTGGTGACAGTGATGCACTCAATGTATGCAGGATACATGGAAAAAGCAATACGATATAGTGAGAAAGCTCTTGTGCAGGTGGATCGCTTGCAAGCTGCTTCATCGTCTTCACAACTGATGTCAATGTTCAAGCTGGTTCTTCTAGAGCACATGATACTTTGTCGCATGGTTCAAGGACAGATGCCACAGGCCATAAAGGAGATTTCTCAAGTTTATCAGATAGCTCAGAATGATAGTAAATTGCTGACATCTCATTCATCTGTTTTACACACTCTTTTGGGCCTGTATGGAATGTCTATGAATTTAATGGATTCAGCAGGGGCACAGTTTAATGCTGCTCTGGAGACTTGTGTGAGACCAGAACTCAGAAACTTTATTGGATTAAATTTGGCCATAGTCCACATTCGATCAGGAGCTACGGGAAATCAGAGAATAGAGCTTGAAAATCTCCTAGAGAAAATCAGACCAGATCAGCTGGCCATAAGTTCGCAAAGTCATCATGCTGGATATTACTACATCAAAGGACTACAAGCCTTCTTTGAATCAAACTTTATGGATGCAAAGAAATATTTGCGTGAAACTTTGAAGATATCCAATTCTGAAGACCTGAACAGATTAACAGCTTGTTCTCTGGTGTTACTGGGAAATGCATTTCTTTGCCAGGGAATTACACAGGAAGCCCTCGACATGGCATTACCAGCAAGTCAACTCGCTGGCCGTATACCTGATTCATACATTCACATGTGGGCTGCCTCTCTCCTTAGAGATTTGTATGGCTTAATGGGAGATCCTGTTTCTGCCAGTGAATACTATCAATTACACAACACTTACACCAAGCAGTTATTGGAGAGTCACATGCAAGCAGGGCAAATGAACGAGCATAAACTTCTTGAGTGGGTTGGTGGCTTAAGCCCGCCAAGGCAGACAGCTGCCACGCCAGCAGGATTGTTGTCAACATTCCCCCAACCAGGACCAAGCAGCTGTAGGATGTAATGAATGTCTACTGGAAAGGAAAGAGACAGTCTTCGCCCAAGTCATGACAATCAAGAGCCTAGCATTTCTTTGATATCAATTAACTTGTTGGAAGCCAATGAGACCAATGCTGTCTACAGTGTAGAAGTTCAAGTTGCTTGGTGATGGACATCAAAATCTGAATGGTGTTAATTTCCAGGGCTCAGTCAGCCAGAGTCAGGCTGGATATCAATTTTCAAAGGACATGGAAATCTCTTTCCCAAACAGTCTCAAATGTACAGTAAAAAAAACAAGAACCTGATCAGTTCAATTTCAATTAAGATTTTTATCACATTTTATGTGTTACTGGTACCTCTAAATCAAGCCAGTTACATTGCAGTGACTGATGTGTCAGTGTAACAAAGTTTACATGGCCTTCATGTACCTGGAGAAATATACTTTACCTTGTACTTTCAACAAATGTTTAATTGGCAAAAGCTGTACATTCAATGATGTTGATTTTTCAGATTCCCATTTGCTACTTGTTACAGTGTAGGTTAGTCGTGAAGACAGACTGATATAATGTCGCTTTACCCTTCTCATTTAATTCTCCCTCACTTCTGGCAGGAAATATAGACCAAAAATGCCACAAAGAACCGTCCTAACTCTACTAGACGATAACAGTAAACCCAACCCCGAAAATAGGAGCCATTTAACACAATTATTGTGAACCCAACCGTGACAAATGGGTGATTCACGCTTCGACTAAACGGGACACTTCTTGATGAGGACATGTGGACAGACAAGTTGTGGGCTGGGGTGGGGGTGACAGAAGAACTATTTTACTTTTGGTCACCATCAGTGGTACTTTAATCTGAGAATAAATAAACTGAAATAAACCGATTAGCAAACACCGGCAAGAAGATTGATCATCATAATCTGTAGGATAACCGAATTCCAAAGATTCATTATCGTCTCTTCCAATAGAAATACGCTGCTTAGTCACTGTTAGCTTATTATGTGTTAAAAAATTGTTAATTACATTTAATGTAATTAAAAATATGCCTCGTGAAAATAATGGATTACAATGCACTGGTTTGTTCCTCATACATACAAGGGAGAATTCTTGTTCTTTGGAAAAACATGAAGTAACTTTTTTCTTCTCCTCAGCAGATGTAATTCATTCATTACCTTTCTATGTCATTCCCTGAATTCAAATATTTTGAACTGATGGAAAGGTGATGATTTTCATGTTCGTTTGTAGCTCTTCTGTAATTACATTTTTAAATTATGCGATTGCATCATCATTTCACAAACGTCCATAGTTTCTTTAACATGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SUU7	MAU2 chromatid cohesion factor homolog OS=Nematostella vectensis OX=45351 GN=v1g174619 PE=3 SV=1
B1H1Z8	MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis OX=8364 GN=mau2 PE=2 SV=1
B4ZIX8	MAU2 chromatid cohesion factor homolog OS=Xenopus laevis OX=8355 GN=mau2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10345 all species →	Cohesin_load	Cohesin loading factor	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019440 all species →	Family	Chromatid cohesion factor MAU2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21394 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0032116 all species →	Cellular Component	SMC loading complex	Interproscan
GO:0034088 all species →	Biological Process	maintenance of mitotic sister chromatid cohesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11266	MAU2; MAternally affected uncoordination	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.