Detailed information of FUN_005202-T1 in Siderastrea siderea

Genomic Location: contig_4:3322920...3375586
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002120 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07926
all species →
TPR_MLP1_2TPR/MLP1/MLP2-like proteinCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012929
all species →
DomainNucleoprotein TPR/MLP1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18898
all species →
NUCLEOPROTEIN TPR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006606
all species →
Biological Processprotein import into nucleusInterproscan
GO:0005643
all species →
Cellular Componentnuclear poreInterproscan
GO:0006406
all species →
Biological ProcessmRNA export from nucleusInterproscan
GO:0017056
all species →
Molecular Functionstructural constituent of nuclear poreInterproscan
GO:1901673
all species →
Biological Processregulation of mitotic spindle assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09291TPR, MLP1, MLP2; nucleoprotein TPR-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_005202-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
26.3Max TPM
2.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.22 4.42
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 3 0.91 11.90
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 25.47 26.31
unannotated 1 1 21.49 21.49
live coral tissue/skeleton 1 1 20.91 20.91

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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