Gene detail

Detailed information of FUN_005230-T1 in Dendrogyra cylindrus

Genomic Location: contig_5:4952337...4974159
NR annotation: CAH3110136.1, unnamed protein product [Pocillopora meandrina]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005230-T1

GCGGCTGCTGAGCCGTAAACAACATGGCCGAATCGCCGAAAACATGAAGTGAGAGATGTGTTAGTCTCGTTGCAGGCGATCTGTCCTCTCACTTCCTGAGTTTCTGCTGTCATTATTAAGATGTTAAGGACAAGAATCACACCCAGGAGGTTCTATCTTCGAAGTTTTGTTGCGGCGAAAAGTACTTCAGGGGGTTTAAAGGCAGCTCTTGAATTGGACAGCAATGATATTTCGAACGGATCTAGAGGGACTCCATTTGCCGCTTCTAGAAGAGGTTCTTTCTTTCAAGAGGCACCAAGGCTTGGGAACCAATTCAGTGGCGATTTATTTCTTCAGTCGTACTTGAAAAGGATTCTTCCAAGAGAGAACCACTTTAATCAGTCTGGAACCTTTTGGAAGTGAAGTACAGTAACCCAAATATTGTCAAAtttggctcatcctcggtgtaaaaacctgtgaaactcgccagtgacgtaaaacaaagaatgagcaagacaacaaagaacttCCAAACAATACAGAGCAGGcaaaaaataacaccaaaacaaagaaaaatttcacaGGTATTTACGCCAAGGTTTTACAAGAAATCCACGCAGACTTGAAACAATTTGGACAAAGAGTGGCCACTGATATAAACTCCATGGGAAGAGAATGTGAACTACAGCCACCAAGACTAGAACATTTTGACGCATGGGGTAGGAGGGTGGACAACATTTACACTTGCCAGGGGTGGAAACAGTTACATGACGTGTCAGCTGAAGAAGGGCTGATATCCATTCCTTATGAAAGGAAATATGGACAGTGGAGTCGTATATATCAAGCTGTCAAGCTGTTCATGTTTAGTCCTTCCTCTGGATTGTACTCTTGTCCTCTGGCAATGACTGATGGAGCAGCCAAGACTATTGAGGTTTCAGATTTAACCGAGAAGCTTAGTGTTCTACAGGATGCTTATCAGCATTTGATTAGCAGAGATCCTGAAAAATTCTGGACATCTGGTCAGTGGATGACTGAAAGAATGGGAGGCTCAGATGTTGCAAATGGTACAGAGACAATAGCTGTTCCTCAGGATGATGGAACCTACAAGCTGTATGGATATAAATGGTTCAGTTCAGCTACTGACGCGGACATGACACTTACTCTAGTGAGAGTACAGAACCCTGATGGCTCTACTGTGCCTgGCACCAAGGGCCTTACCATGTTTTATATGCAAACAAGAAATGAAGATGGCAAATTGAACAACATTGAAGTGCAGAGATTGAAAAATAAACTGGGCACCAGGCAACTTCCTACTGCTGAACTTCTTCTTCATGGATCACAGGCTCACAAAaTGTCAGAGGAAGGTCGTGGAGTGCCTTGTATATCAGACATGTTAACTGTAACCCGTTTTCACAATAGTATCATGGCTACAGGTGTTATGAGAAGGATCATGAGCTTGGCTCAAGATTACTGTTTGAGAAGATCAGTATTTGGTAAATTACTGGTGGATCATCCTCTTCACATGCAGACACTTGCTAGATTGGAGGTGGAGACTCGTGCAGCCTTTCTTCTCACAATGGAAGTTGGCCGTCTGCTTGGCAAACAAGAGTGTAACGAGGCATCAGATGTTGAACTACAGCTGTTGAGACTTCTTACACCGATCACAAAACTTTACACTGCTAAACAGTCCATGCAGGTCACGTCAGAAGGTCTGGAGAGTTTCGGTGGCCAAGGATACATAGAAGACACAGGGTTACCAGGCTTAATGAGAGACGCTCAGGTTTTGCCCATCTGGGAAGGAACCACGAATGTTTTATCGTTAGATGTACTGAGGTCCGTGTTTAAAAGTCAAGGACAGGTACTGAAGGCATTTCACGCTAGCATCTCCGACAAGCTGTCAAAAGCCTCTTCGTCCCACCCCATCCTGAAGATTTTGTCAGAACAAGTTCAGTCTTCCATAAATACATTGCTGTCTTCACAAAACTACGAGCTCCTCTCTGATTCGCTACCTGCGCGCGATCTGGCGTTTAGCTTAGCAAGGATTTACATAGCGTCTTTGTTAATAGAGCATGCAGCTTGGGAAGAGACCGAAGAACAGGACATTGCGGCTGCCAAAAGGTGGTGTCAACAGGACTTGACCCCAGTCCTCACTCACCTCAGACACGACGCGTTTGACGCCAAAAGCTCCGCTTGCGACCTGGCACTTGTTATGAAGGGACATCCAGAGTTTACATGAACAAGATGAGCGGTTGTCCTTTGGGAAGTGCAATTCGGCCACAAGCTTGAAATAACTGAACTAATGCAATGGTCTATGTTAATCGAGGAAAAATAACCAGAAGAATTTACGGGGCTGCAAACAAGGCCAGGGATTTGTCAGGAAACTACTTCACAGAGACGTAACGTGAAACTGGTTTTGGCCCAAAACAAGTTCTTCGTTCGCAATCTATCCCACTATTCTATCCTTACCATCCGTTTTCAGCCTTTCTTCGTTTTAAACGTAATTTTATGCCTCTCAAAAGTGACTTGACACGGTTCCTTCAAAGAAGACACTTCACTTTGACATTGACGTTCTTAACACTGATAGATGAATAGAAATCGTCAAAGTGTCAGGGCAAAATTGTCTGGTGAACTCTCGATGCTCTAATATTTTATTTCGGAAGCATTATAATACGACTGCAAGTTGCTTATAGTGCTGAAAAATATGGGAGTTAGTTTCTGCACGGTAGAAACACTAGAAATAACAATCTCTTTTAGATCAGAATACAGTTGAACCTCTTCTTTCGGGGGAAAGGTACTTGGGAGTAGGAAATGTTGACTTATAAAGTTTTCAAAATACGTCATCCACAACTCTGGACAGGCAAACAAGATATCTTTTGTCGTATCTTATTGGTGGTTCGCATCTGACGTTATCAAAATTTGAAAATCTAAGCTGCTAATCCTGGTGCTCCAAAGGAggacaccaatatggcggctgcaTGCTAAATACTGTGCCACTGAAACGATACAAAGCTATATTTGAAAAATCTGAATCTTTCAGTCCTTTTTGAACTTTTAGTTTTCTGGTACTTTTCAAGTGGCTAAACAGTTTTTGTTACTTTGATGAAAATCATCAGTTGGTTTGATCGATAAAAGAATGGCCACAATATTAtagataaaacaaaataatttgaagTTGGTAAACATTTGTAAATTTCGCCTACAGAACAGGCGGTTTAGCGGGTCAGAGCGCGGAGCACGAACAGAAACGCGAACGCATAGCGCGACGGCGACTGCAAAGTGCGAGATCAACCGCCTGATGTGCAGGCTATGTATTGTACCAGGTTAATTGCGAGGAATGAACTTCTAAATTCTGGAAATATCAAAACAATGCTATGTATTGTAGGTACGTGAATAACTGCCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XWZ2	Acyl-CoA dehydrogenase family member 11 OS=Caenorhabditis elegans OX=6239 GN=acdh-11 PE=1 SV=1
P33224	Putative acyl-CoA dehydrogenase AidB OS=Escherichia coli (strain K12) OX=83333 GN=aidB PE=1 SV=3
Q5RBD5	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=IVD PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002841 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18158 all species →	AidB_N	Adaptive response protein AidB N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052904 all species →	Family	Acyl-CoA dehydrogenase-like protein	Interproscan
IPR041504 all species →	Domain	Adaptive response protein AidB, N-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42707 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_005230-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.