Gene detail

Detailed information of FUN_005232-T1 in Siderastrea siderea

Genomic Location: contig_4:3616158...3632288
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005232-T1

gtttgagtgaatttgcgtttttcagcacaaataaaagcgataagaaagataagctgagtcatcagagtttaaacattacgtcagcCAGTAACGTTAtcgtcaaaatattgtgtcacacaatcacacttttcgtcacgccggttcgtataaatagaggatcgcgctaacatttgtgaaacctaggggtggggagggtcagaatggccggttaaaatgcccaataggCTTTCTTGTTAACAGATTAGAACAAAGCTATCATTCTTCCCGGGTTTTACCGTATTCTGGAACTACTGGTCAGGACCGTTTTCATTGTAAGTTAACTTGCAGTTGCAAATGACAACTTGAAGTATTACTTTCCTGAAAAAGTACAACCACTTGACCTCATACCCACAAACTAGTAGCTCAAATAACCAAGAGTTTATTGCGATAAGcatctttttttttcgtgatgGTATCAATGGTGATGGGATGATACAATATGTTGTGATTGACAATCAAATCGATGTGAAATCGTACGACTAATATTACTAGGCTGAAAAATATccttcgttataccggggtcttcgttGTATAGGGGTTCGTTACATCGGGGCCCCCTcctgtaatttgaagccacactagtATGCCTCAGCATACCGTTTATTACCAATTATCATCAGTATGGTCTAAAATCCATAGGACAGTGCATGATATTTAAAAAGAGGACTTCAAAATCAACTTCAGCAAAGGGAAATGGACCTTATTCACTGCTTCAATCCTGTTTAGCAAGTTCGCTGATAGCTGATAAACAGGATGTGATCAGGAAAAATCTTGCTTTACGgctgtgtttgttgttttttttttttaatttttcaagaGCTTGCATCAAGCCAGTGCATCAAAGGGTCGACAATACTGCTGAACTTAATCCTAAATTAAAGTTTTAGCTTAGTTTTGGGTAGCTGAcaaaatttgacaaaattttatCCATAAATTAGGTTATTGAATGACCAGTGCCTGCTGGATTGAAAGCTGTTGTACTTGTGTGTATTGGGTTTTACTGGTGGCCTTATCATACCGATACCGGGAAACAAATTagttcgttttttttaaatttatttgaaaacggCTTTCCGAGAAACAAATGTGTCAAAACAGTGAAACTATACATAAAAGATCAGCacgtaaaaaatatttaatctCTGTTTAAAATAGCGGGAAGTTTTGACGGCAAGCCATaaattaaagggaaaaaaatcaaTGCAACAATGACAATATATAATACAGCGAAAAAGTCCAATTTTCACAGTGTTGTTTTCTGGCGTTATGTAATAGTCCGCTTGGCTTGGGTTTTCGGGCTTCACGTATTCCCATCAAAACCGGAAAAACAGGTTTGGTGTCACGCGCGAAAATCGCGCCAACAAAATAGTTTAAAATCGACTTGCAAATTTCATGCTGCGTAGCGCGTACTTTAGCGTTTCAAAATGGCGAGGAGAGTTGTATGCAGTAGAGCTTTACGATCTAAGATTCTTTTTAAAGAAGGACCACCAAATACTGTTCGATCTTTTCTTCTGGCAAGAACTAGTAGTCACAGCGTCGCTGGAGTTCCAAGAACAAATCCTTTAGACAGCGATCAAACGGCTGCCCGTTGTTCACGGTCGACGGAATCTACTTCGCTTCCAGGATTTAAGCTTAGTTTCAACGATGCGAAGAACGCTTTCCAGTCGAAAACAAGTTGGGAGATTGTCCGAGCATTGGCAGTCTTTAGACTGTGCTCTTTCGATTTTCTGGTCAACAGAAATAGAGAGCTGCTCAATCTCGGCCAAAAAGTTCTTGGCAAGCAGCTGTTCAGAAGGTTGATGAAAGCAACATTTTATGGCCATTTTGTGGCCGGTGAAGACCAGGAAGCAATAAAGCCAGTGATAAAAAACTTGGAAAAGTTTGGGGTAGGAGCTATTTTGGATTATTCTGTAGAAGAGGACTTGTCTGAAAATGAGACCAAAGCTCACATGGCCAAGAATGACGGCGAGGCTTCAGATCCTACTGATGAGTATAGTCGATATAAACCCCACATTGAGTTCGCTGACAGGAGGAAAGGAGTTTGTAGTGCCAGGACTTACTTTTATGAAGGCGAAGAAGAGTGTGATAAGAGAGTGAAAACATTCCTGAAATGTATTGATGCAGCAGGTGTAGCATCCAAAGATGGCTTTACTGCAATCAAGGTGACAGCACTAGGAAGACCACAGATACTCATGAGAATATCGGAAATCCTGAATCAGACACAATATTTCTTTGACTACCTGGCCTCTGATTCCGTGAAGATGAACAAGATTGGAAACATTGTGGCAAGAGACAAATTCTTTGAAGGCTTGGAAAGACTTGGGGTTGAGATGAGCTCAGAGGAAGCCAATAGAATATTTGACTTGATTGACACCAACAAAACTGGTGATATTGATGTCATAGAATGGCATGAATTCCTCACACCACAACTTAAACTGTCTCAGTTGTTCAAGGCCAAGCCACAGGGAGATgaaaagacAGGAAGGCCAATCATTTCAGTTCTTAAGGATGAGGAACTGCATCAAATGAACAACATGTCAAACAGGCTGACAACTCTTGCTGAGCATGCTGTCAAGAGAGGTGTGAGGCTTATGGTAGATGCTGAACAGACGTATTTTCAACCTGCCATAAGACACTTGACATTAGAACTGATGAGAAAGTTCAATACAGACAATCCACTTGTACTCAATACGTATCAGTGCTACTTAAAGGACACTTACTCTAAAATCCAGACAGACATGGAGCTGGCACGACGTGAAGGATACATGTTTGGCGCAAAGCTAGTCAGGGGTGCCTATATGGAGCAAGAGCGATTACGAGCAGAATCTCTTGGGTACAATGACCCCATCCACCCAAGCTACAAGGCGACTAGTAAATGCTTTGATGAAGTTATGAATGCTGTGTTGGAAGAGACCAAGAGAGGAAATGCTAATGTTTTGATTGCAACTCACAATGAAAATTCCATTCAAGTTGCCATCAAGAGGATGCATGAGTTGGGACTTTTGCCAGAAGAAAGGAAGGTCTTCTTCGGACAGCTTTTAGGAATGTCCGATCCAATTTCATTCACACTAGGAAATGAGGGCTATGCCGTGTACAAGTACGTTCCATTTGGACCTGTAGAAGATGTTCTGCCCTACCTCTCTAGACGGGCCATGGAAAACAAGGGCCTTCTCAAGGGAGTGCTCAAAGAGAGAGGACTTCTGTGGGATGAGCTGAAAAGGAGGGTTCAAGAGGGAGAGCTGAATTATGACCCTGCACATGTATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01619 all species →	Pro_dh	Proline dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015659 all species →	Family	Proline oxidase family	Interproscan
IPR002872 all species →	Domain	Proline dehydrogenase domain	Interproscan
IPR029041 all species →	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13914 all species →	PROLINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004657 all species →	Molecular Function	proline dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006562 all species →	Biological Process	proline catabolic process	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00318	PRODH, fadM, putB; proline dehydrogenase	EC:1.5.5.2	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.