Gene detail

Detailed information of FUN_005284-T2 in Colpophyllia natans

Genomic Location: contig_6:6102879...6116011
NR annotation: XP_020610040.1, signal recognition particle subunit SRP72-like [Orbicella faveolata]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005284-T2

GCAAATATGGCCGCCACGTCTCCTTCTATACCGCAGCTCTTCACTGAATTAGAAAGATTCGCAAAGGACGGAAATTATGCCAAAGCTCAGAAAATCGCTAGCAAGATTTTACAAGAAAAACCAGACGACAAGGAGGCATTTCATTGTAAGGTGATCGCTCTAATTCACCAGTCATTCTTTCGGGAAGCTGTCGATGTAATCAATTCAGCGCCGAAGAAGGGGATAGAAATTGATCTTCATTTTGAAAAGGCTTACAGTCTATATCGCCTCAACAAGACTCGGGAAGCCCTGGATATTCTAAATGCTGTTGCTGAGCCAACAGAACATGAAAAAGAACTGAAGGCTCAAGTGctCTATCGACTTGAGGACTACAGGGCATGTCTAGATCTGTACAGAGATTTGATAAAGAATTCTCAGgATGACTATGGAGATGAACGAGAAACCAACCTTGCTGCTGTTATTGCTGCTGCTTCTCAGTGGGACGGACTTAAGATGAATGACCCTGGTTTGAGAGAAGACACCTACGAGCTGTGCTACAACTCAGCATGTCTTTCTCTGGGTCAGAGTGATGTTGAAGTTGCACaacaaaaactaagaaaagCAGAAgAGTTGTGTCAGAAAAGCCTTCAAGATGATCCTGACGTAGCAGAAGAAGAGATTGAATCTGAGATGGGTGTTGTCAGGACTCAGCTTGCCTACACCTATCAACTGCAAGGAAAGAATGATGATGCACAGAAGCTTTATAATCAAGTTCTCAAATCCAAGCCTAATGACCTGGCCTTAACAGCTGTTGCTTCTAATAATGTCATCACTCTTAATAAGGACCGTGATGTGTTTGACTCCAAGAAGAAAGTCAAAGCAACAACTGCAGATGGGCTTGAGCACAAACTGACTGACACTCAACAGCGAACTATGGCATTCAACAGATGCCTCCTGCTGTTTTACACAAATCAGcTGGAAGCTTGTCGCAGCCTGATAGCTACGCTGGAAACAAAATACCCTGAGAGCGATTTTCCTTGTCTGATGAAAGCTTCACTTCTCCATCGAGAAAAACATTCTGATAAAGCAGTTGAGCTTCTCAAGAGCTATGCAGACTCTCATGATGACACTGCTATGAATGTTAAACTCACATTGGTCCAGCTGTATTTAGCACAAGGAAACATTCGCAGTGCCTGTACCACACTACGCTCAATTAAAGACCTGAAATACAAACCAGGCGTGGTGTCTGCACTGGTGACGTTATACTCCCATCTTGGTGACGTCAACACTGCTGTTGAAGTGCTTGATGACGCTGTGGAGCATGCACAGAAGAACAAGGAACTGATGCGACAGTCTGAAACTCTTTCATTGATGAGAGAAAATGTGGCGTACAAATTGCAACACGGCAAAGCTAAAGAGGCGGTGGATATGTTGGAGAAACTACACAAGGAGGACCCACGAGATGTCAAAACATTAGCTCAGCTTATCAAGGCGTATTCTCGTTTAAATCTAAAGAAAGCAGAGCACTACAGCGAAAAACTCGCACCTCTAGACACGACTTCCCAGAGTACACCTGTAGCCGTGGATGAATTGGAGATGTCCCTCAGTGCCATGGGATCGCGATATGCTAGGACAAAACTTAAACAAGAGGGTGGAGATACAGAAATGGAAGATTTGACGAAAGACATCATtgtgaaaagaagaaaaagaaaacgaaaaaggGGTACGTATGAATAGCGATGTTTAGACTGATCGTGAACAGCAGAAGTAGTTGACTTACAAGTACCATATTTCTTCATAGTGATTGGCGGACAGCAGGCCAATTAATCGTTAATTTTTAACTTTGCGTTCGCAATTTCGCAGTCGTGTAGTAAATATAGGTAATCTCTTGAAAGCAATTGGTAATGACTTACACTAAGGGTGATATTTGAAACTTCCTCGTAGTGTATATCATTGATATCAGTTTTATTCATACAATAACCACCCGGGGACTCCCTGGGAGCATATATTTGCTCGTCGGCaacttttgaaaagaaccctaTGAGGTACCAAGATGTTGTTTTGTAGGCGCGCCCTGAAATTTTTTTCCCCCTTAAGATGTACCAATTCTAAACAAAACATCATCTCGTCTCACTTTTTTTGGCCCAATGCCCTAAAACATGGACGTTTTGATGCTGAACATCCACCAAATGAACtggaaaacatttgttttgcGTTCGTCGTGTGAGCGATTCTATTTTGTTATCTCACAATGTGAATCTGTTCTACTTATTCAGGTAAGCTGCCGAAGAACTACAATAGCGAAGTCGATCCAGACCCTGAGCGGTGGATACCGAAAAGAGAGCGAACTTACTACAAAGGCAAGAGACAGAAGAAGGGTGCTGCAGTAGGTAAAGGAACGCAAGGTGCTTCGGCCCCAACAGAAGCGTCGTCCAGTCCTAAAACACCCGGTAGTCCCAAGCCTGCATCCCCGCCGGGTACTCCCTCCGCAGGGGGAAGTGCCGCCAGTGTGGTACCACCCCGGCAACAACAGCCCCAGGCCGCCAAAAAGAAACAGCGACCCAAGAAGAAGAAAGGCGGCTGGTGAAAACATCAATGTTTGCATCCTTGTAACGGACTGATAAGTCTTGCAATAAACAATCGGAATTTCAGCAGATTTTCGTTGTTTAGTTTACAAGACGAGAGCTCAAAGTCAGTCACTTTTTTCATTCTTTGGAACGACCACAGTGCAGACGAAATGATAAGAAAACGTCTGAAAGTGCGGCATGAGGATAACGCAAAATAGATATTTAAATTCAGCAAACCATTCTTGTAAAATGAGAAGGAAAAACGTATTATTAAACAACTCAACCAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33731	Signal recognition particle subunit SRP72 OS=Canis lupus familiaris OX=9615 GN=SRP72 PE=1 SV=3
O76094	Signal recognition particle subunit SRP72 OS=Homo sapiens OX=9606 GN=SRP72 PE=1 SV=3
P49965	Signal recognition particle subunit SRP72 OS=Schistosoma mansoni OX=6183 GN=SRP72 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF17004 all species →	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026270 all species →	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR031545 all species →	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094 all species →	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03108	SRP72; signal recognition particle subunit SRP72	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.