Gene detail

Detailed information of FUN_005300-T1 in Colpophyllia natans

Genomic Location: contig_6:6311168...6316280
NR annotation: XP_020619192.1, pituitary homeobox 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_005300-T1

ATGAACCGTGGCCGTCCTACTGAGGCGCGTTGTTCTAGGAAAGCAGCTTGGACTGGAGCAAAAATGGATCACAACGCCGCCACGAGGATCGAGAAAGCGGACCAGAAAATAGCAGATGAAAGAAGCTTCATGGAACTGGGGAGTGCCGGGATAACCGCACTCGGATCCAAACAGAGCAAAAAAGGCCACCGCCGCAAACGAACAGCGTTCACGGCCCGGCAGCTTGAGAGGATGCAGGCGGTGTTCCAGTGGAACAAATACCCGGGGGTAACTGTACGTGAGGCGCTGGCTACTGAACTGGGAATAAGCGAGGCGTCCGTACAGGTTTGGTTTCAGAATCGCCGATCCAAATGGCGGAAAAGAGAACATAACAAGCGACCGGCTGATCGTGAGAAAGAGTTTGACGCATGCTCGTTTTATACCCACAACACCGCTCAACGTAACTGGACGCTTCCGCAGGGGCACAGTTACTGCCCATATCAAATAAATTCTCGAACAATGTTCGGTGGACCACCAGTATCTGCTGCCCTCATGCCTGCAGGCTCGCCTGTTCACAGCTCTCTTATCACTTGTGCTTCTTTCTACTCCAACCACGTGCAGCCGTACGGTCAAGAGAAAGACGAAAAAGATGCAGAGCGGATTGACCAGACACCTTTCATGTTAAAATCTGGTGACGTGTCCATGAAATATGTTGACCTTGATCAAATTCCTAAAGTGAGGTTTGAGGCTATTCAAAGAGAACCTTCAGCAGATGAAATCATGGGTGCAAATGGTCTTCTGTGCATGCGCGGGACATCTTCTTCATTCATGTCAAGTAAATAGTTATTTAGTATTGTAGGGTTTTATTATGCTTGCAAATGATAAGCACATGCAAATGTTTGCAGCAAAGTAGCTTATGTTCTTGTCTCTGTTATGGTTCGTAAAGTAAGTGTGCATGCATTTACTAATCTACGCTTATGTTCTTAGTCGTGTGTCCCGTAATTCATCCCCAAAACTGGGGCCAGTTATCCAAGTAAATTCATTAACTGCTTGTTAGTTAATTTTAGTGATTATATTGGCTTAGGATAGTTCCCTCCCTAACTGGCAAATTAAATTCTGCTGAGTGAATATTAAACGATTTCAATTAGCTGGTGATTATGAACACACGATAGCGTTGCATCGTGTTTCAGCAAGGCTGCATATTGATTATGACTCCACTCTGtaacaatttgaaaaaagcCGAACCTAATTAACATTACAAACAAAACCATTACAAATGGGAGATGTAAGTCTTTAGCTTTTGCAATACTTGCATGGACTAGAGCCATTTACGCTGTCTTATTAATAgcggacttctctttggaaatCGTTCGTTCACTAGGAATAAACATGTTTTGTCGAGTGTAATGTCTCTGTGTTTTGTTCAAAACGATGATCTACACCGATTAAGTACCTAGAGAGGTGTGGAGAGAAGGAGGGTCACTAACTAGGGAATAGTGTCTTTGATTTATAGAGAAGGTATGCCCCAAAATCGCTGTAATTTGCATCTGACACATGATAATGTGTCATGTCAATGGAGTCATGACCactccgaaacgtcggcttttatcGTTCGCTTTTACCgttttaaatttacattttgaccTTAGGACTTCCAGGTCATTCCCGGCTCAGAGAAAGAGGTCTGTGGGCGGAGTTTTACGATAATAAAACGTTTCGGTTAATTTGTGATTTATTGTCCCTTCATTCGAAATTATTATATTACTTAATGAATAGAATTCAGAAAGATGATGGATCAGATATTTACTGAACTACAGTTTCGAGAGGATAAGTAATTACACAGGCGGATGTTAAGTGACTTCTACAGAATGCCAGTTGTACATTTTCCGAGTCAATACAAATAAGCTTGACTCTGACGTCACATAGCTAAAACCTCAGGTGCAAAGTCAGTTATTGCGGGGAGTAGATACGAAACTTATTTTCTGTCATTGAGGACAATATTTCGCCTTGCAAATGATAACAGCGTTGGAACAAGTTAACAACTTAAAATAATCAGCGCTTGCAACAGCTCCCTTCTAGACAAGAATTAGCTAACACTCGCTCTTATGAAAAGTAAATATGAATGcagaaataatatattttcttcatAGGCTGTCCGTGTTTACTTCGGGTTGGTTTATCTACCTTGTCGTACTGACGCCGAAAGTTTCATCGCTAAGTGAAAGACTGCATGACAAAAAATGACCAAACAGCTATAACCACGAACTATTGATAAATTGTATTTGTTTGTAATCCTTTGCAACGAAGAGGTAAAATAAAGATCGTTTTCATCTTTCTAAGTTATTTTGACTTCTGATTATTCTAAACCTTGGCACGGTGTTAAT

Protein

Uniprot

Gene family

Uniprot term	Description
O42356	Retinal homeobox protein Rx1 OS=Danio rerio OX=7955 GN=rx1 PE=2 SV=2
Q99NA7	Pituitary homeobox 1 OS=Rattus norvegicus OX=10116 GN=Pitx1 PE=2 SV=1
Q9W751	Pituitary homeobox 1 OS=Xenopus laevis OX=8355 GN=pitx1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan