Detailed information of FUN_005365-T1 in Siderastrea siderea

Genomic Location: contig_4:5461286...5468409
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18158
all species →		AidB_NAdaptive response protein AidB N-terminal domainDomainInterproscan
PF02770
all species →		Acyl-CoA_dh_MAcyl-CoA dehydrogenase, middle domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041504
all species →		DomainAdaptive response protein AidB, N-terminalInterproscan
IPR009100
all species →		Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamilyInterproscan
IPR006091
all species →		DomainAcyl-CoA oxidase/dehydrogenase, middle domainInterproscan
IPR052904
all species →		FamilyAcyl-CoA dehydrogenase-like proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42707
all species →		ACYL-COA DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016627
all species →		Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0003995
all species →		Molecular Functionacyl-CoA dehydrogenase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_005365-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_005365-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
6.4Max TPM
0.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 4.32 6.40
unannotated 1 1 6.12 6.12
live coral tissue/skeleton 1 1 5.03 5.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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