Gene detail

Detailed information of FUN_005385-T1 in Siderastrea siderea

Genomic Location: contig_4:5818181...5828030
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005385-T1

ACCTCATTTTCTCGGACTTGAAGACGTGCTAACTCAGACGCCATGTTAGAATATAAACTGAACAAAACATTTCCCACAATTCCGCGAAGCCTTTTCCCGGTCTTTGTGAATGACACGACAACCTCTACTCAGCACGGAGGGGTAAGGTATACAAAGATAAAACAATTTCAATTCCAACTAGAGTGCTAAATGCAAAAAAGGTAAGATGTTTGTTGATTTTGTTCATATATTAATAGTTTTCAAGCAACGTTTATTTGTTACGTTGCATAATTATAGTAAAAGCAAAAGAAGTTGCGCGGAGCTTCAAAGCCCTACCCTACTAAGTCACGAACCCGCTCCTTTGCTTCCGAAACTTTAGACAAGGAAAAATCATGTCTTTCTTTTCTGAAGGAACTCATCGGTTTTTGCCCATTCCCGAGGACAGTAGAATAGAGACAAAACCATTTTTAGATGCTGCGAGTGAAGTAGTACCCTTTTTCGATGTTCTAGGACCTACAGCATTTGCACCTGTCAAATCAGACATCAATGGTAACATAAAGAAACTTAGAGAGAAATTTGCCCAAGATCCCGAAAAATTCAAAACGCTGCAAGACATTGTGGGAAGTGAAATTGAGGCAAAGGCGACCCTTGCAAAGAATTCTGCTACGGATGCCTTGCTTTGGCTTAAAAGAGCTATGCAGTTTATCATTGTCTTTCTTGAGGAGGTTCTTACAGGAGAGCAAGATCTTGTAAAATGTGCCAAGAAAGCATACGAGAATTCACTAAAGAGATTTCATGGATGGATGGTCCAAGGAATTTTTTCTCTTGCCATGAAAGCTGTCCCATATCGCAAGGACTTCATTGATAAACTGGGGCGAGGAAAGGTTGACGAAGAGACCGTTCTGAAGGAAATGAAAGACTGCCTTGATCTCTTATCTGCAAATATTAATGTCATTGAAGAATTTTACCAAAAAAATGACTTAGATAGTACACAGAAGGTTTAATAAGCCCTTGGGATAATTGTTTAATTTGCTCATCACCAAATTCAGGGAATCCTTTGGGAAAGGAAGAATATCAAGATATTAGGTAAAAGGTTCAGGAATTGGGGAAAAGGGGAAAaactaaaaaggaaaaaacagttTTCAACTTGTAGTCAATCCTGGTTAGACTGTatcaaaaatatttatttttgaaaacgttgtATTAACAGCACATGTAACATACGATACTTTTTGGCACTTGCATCCATTCAGTGATTGCATTTAGCAGTATCGTATAGCATTATAGCATTTTATAGTGTGAATTTGCATGAAAGTAGAGTAGTAGTGTAGTAGTTGCCTTGGTCACTACTGTAAATAACAATCAACTAGTAAATAATTTAAGACTCATAGCATTGCACTTGTCTAATTATGCCAGAGAATCAAACAATAGTTGGCTGAAACCTCCATTTTGAGTGTTGGAAAATGTTCCTCCTTGCTGCCAAAGCAATCATATGTTGGTTTAGTAAATGTGCTTTCTTGATTGAGTTGGCATTATTTTCCAACTTTGAAGGGGGCACTGGGAAATTTTCCAACATGTGCAATTGGTTCACATTCATAGAACCAAACAACAGGATTGCTGCTgcattgttgtttttttagtgTGCTCTTTTGTTTAGTCAGCTTTATGGTGTGAAAAACATGTGTCACACGTTAAACCTAGTAAATAATATAGCTCACTGTGAGTCTCTCTGTTGCACAGCGGTTTGGGCATCTGACTCAGAGGTGTTTGCAGAAGGACAAAGGTTTCTTTATTATTATGTATATTGACAGTGCATCACAAAAATTATCACACAACCTGCAGTAAGCAATCCTGAAACAAGGCAAGGACTAAGAATTTTCTCTCAAGTTACACACTTGTAATGAACCGAGTACTGTTGACCACGTTgactttattattttattattgtttacaaaaaacatttaattggaGGATTGGGTGGGAGGGAGGGAGTGGGGAAGGGGATtggattttcaatttttggtgCTTATTGGCAACATCCGTCATCATTTTGTTTACTTCTGGACTTATACAGAAATGCCCAAATCACAAGGTGCTGTCTATCAACTGTTATTAGAAAATTTAATAATGATAAACAGTTAGTTATAATCAGTGAATTATAATTTATCAGTATCTAATATAATTTAGAGTGCTGCATGCCTTACATTTACCATTTGACAGCTTTTGGTAATGGGTTTTCCACAACACTGATTTGTTTTTGAAACCTTTCTAATTGGTGCTGTTTCAACTGGCCAATCAAAATGGTAGGACTGTGCAAGGTGGAAAGTAGGAGGACTGTACAAATTTGCCATGATCAGGatctttaaggtggctccctatagttttatgatcGCGCGTGCACTGATGATGTGAGCTGTCATAATCTGCGCACGCTCACATGAAATCGTAAgattttcctgacattttatgacatcagcatagccaaaaaagcaaagttaactgTGAATTTTCTTGCGTTTCCtgcagtgaattttttttaaattttgcacattttgagatactaacgttACCTTCCacaactattttttggaaaaattctaacagaccaattcagtttaatggtcaaaaataagaaatcacgtgatatcggtgaaactGTCTGAATGACACATATTTtgcccctgcaaaatgttagtaaaaatcattttcacaagataggaaagtttaaaaaatttcactgagggaaaatcaaaatattaaagaataaagacaaattaatggaaaatatccatcattctttagacgttttgttgccatgacaacggcctatgcctaagaagtaaaaactaaaaaataagtGTAATTATAacttattttttagtttttacttcttAGGCATGTCGCGAGGGTGGGACAAAGAAAgtgtaattatgttggtaatcttactggcaaatctcaggaacaaagattgcaagacaacagaactaggctttcttttgtaactcttgccagttcgtatagtcacttttgtagaaactctagggagccaccttaaggggttttagggctccagggctgcGGCCTAAAAACAGAAGGGCTGATCCAAGACAGAAATATTGGGGCCCTAGGGCATTATTGCATCACTTAAGACCTCCAGTTATAAGCCACAAAGTTTATTATTAGCTTTCTGTTCGAGAAGCAGAAGAGTTTGATATAAAAATTTGGGGTTTCTAGGGACCCCTTGGGACCCTGAAAAATAAAGCTGGCAAATCTGTCTCCCATCTATTAACCAATTAAAACAGCAGCCTTCATGAAGTTTCTTATAAATATGGCAAATATCCCAACAAGCTTTAAATTTGTCAAGTGGCAACTGTACAGCACATTATTTTTAGTACTCTCCTTATTCCATCTTGATAGTTATAGATTTTAGTTGTCTATTTTGTTTTGTGCCAAGTATGTCTGTTAATACTAAGTTGGATGTTTGGGAAATAAATTAATGTTTTGAAGGGGTAATCTTGTGTTCTATCTCATGTTTATAAGAAATGTTTATCATATCTATAACAGAAATATTCTCGAAACTGGTTGGATGTTAGCAGCCCTGTTTTGAGCACTAATTGGACAGTCTACGTGTCAATGTGCACTTGAATGGGTTCCTTTTTTCATGAATCTGAAAAAGAATCTGTTGTCTTTTCCGTCACCAAATAGTTTATCCTATCGCAATCTTTCCAGTCCAGAATTTTTGTCTGTAATCgaactcgtgattaaacaaatcgaccCCCCACCAAGTCctgttatgcatggttcaattctacctgttaccatcccccccgggcaaacccccggggatttgcaatttttttctcacttggcggtctattcccttcccccgggcacgcagaaagagacaattccccacccccgggactcttcatcgaccacaaatacgttgttttgtggcaaaaccagacgttttggcaAGAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08718 all species →	GLTP	Glycolipid transfer protein (GLTP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014830 all species →	Domain	Glycolipid transfer protein domain	Interproscan
IPR036497 all species →	Homologous_superfamily	Glycolipid transfer protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10219 all species →	GLYCOLIPID TRANSFER PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0120009 all species →	Biological Process	intermembrane lipid transfer	Interproscan
GO:0120013 all species →	Molecular Function	lipid transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_005385-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.