Gene detail

Detailed information of FUN_005428-T1 in Colpophyllia natans

Genomic Location: contig_6:7774383...7779496
NR annotation: KAJ7336591.1, Fibroblast growth factor receptor 4 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_005428-T1

TAAATCAGTTAAGTAACTGGCAGGCTACTAATATCTCAAGATATCGTGTATTGAAAGTGGAATAttcaagaacaaaacaattttgcATGTTCGATTTTGAACACACTTGATGGAATTGCTTCAGAATTATAGTAAAAGTTAAGTACCGTTAAAATTACTGTGAATGCACATTGTAACAACGTAAGAAAGCCTGTCGAgataaaaccaaagcaatttcGGAGAACGTGGGACTTTCAGTTGAAAACAACTATATCCTATAGGTTGCACTAACAACTATCGCAATTCCTGATTGCGGGGAAAGAAGTTGTCTATCGCTTCTCAGTTGCAATGAACTCTCCCATTTCTTCTATTTCCAAAAATGTATCACGTTTGATTTTCGTAACCGGCAATGAGCGCATTACTGAATGACTTTTCCCCGAGAAATAAGATGATCACTTAAAAACTATTACCTACAGACTCCTTTGGCATTTGAATTGATTATAATTCAAAATCAGCTTTTGCGGCAGCTAATTAAACTACACATCGTCGGCATCACATCATGACATCAATGATAGCTATACATATTCTGTCTCTGTGTCCTTGTTTTAGGAGCACCAAGATTTTCTGATCCAAGTATGTTAAAAAGAGCATTTAGAGCATGGCCAGCATCACACACAATCAGACTCAAGTGTCGAGCGACTGGAGCAACACCTCTCAAATACACATGGCTAAAGGACGGAGTGAAATTGTCCAGGCGACGGTTGGACCCATACCTTAACGCTTCCCTTTGGTACCTAAGACTAACACAACTAGTGCCCAACGACTCAGGGAAATACACTTGCATAGTGTCCAATCAATATGGAAGTATAAATCACACTTACACGCTTCAGGTTGTAGCTAAGCCAAAATTACGCCCCATCTTACAGAGAGGCCTTCCAAAGAATACAACCGTACAGATTGGAGATAATGCAACAATGACATGCATTGTGCTCGATAGTGGAACACTTCCAGATTTCAGATGGCTGAAATGGGACAAATCCGTCTTAtcaataaagaagaatggtgacTTGGAGAACGGACCTTACCACCTTATAGACCCACATCACTACAAGACTATCCGAGTCAAAGACCATTACGGCGTTGAGTTGAGAATAACAAATGTTACAGAGGATGACTTTGGACTCTACACTTGCCTTGTAAGCAATCATATTGGCAAGGATTACAATAGTGCTTTTCTTAGTAAATATGTGAAACCCACAGTTCCTGTTAAAGCTAAGCCACGATCACCGCCCATCTTACAGAAAGACCTTCCAAAGAACACAACCGTACAGATTGGACATAATGCAACAATGACATGCATTGTGCTCGTTAGTGGTACACTTCCGGATTTCAGATGGCTGAAATGGGACAAATCCGTCTTATCAATAAAGAAGATTGGCGACGACTTGGAGAACGGAGCATACAACCTTATAGACTCGCATTATTACAAGACTTTCCGAGTCAAGGACCATTACGGCCTTGAGTTGAGAATAACTAATGTGACAGAGGATGACTTTGGACTCTACACTTGCCTTGTGAGCAATCATATTGGCAAGAATTACAACAGTGCTTTTCTTAGCAAAGAAGGGAAACCCACCGCCTACGTTAAAGGATttcaaggaagaaaaaaaccTCAAACAAAATCTGTTCGCTTTTATGTGATAATTTCTGTGGCAATACTTTTGTCCGGAGTTCTTGTTATTTCAGCGATTATCGCGTGGTATTTTTGGCAAAAACGAAAACTCATGAAGAGACTGAGTGCACCAACAGGAGCCTTAATGATTGACTCGATTGAACGACCAGGATCCTCAATACGACCACGTAATGAGTATGTCTTTCTCCTCTAGTCCTGAGGGGTCTACTTGGTTACCATGCTTAAGCCGTCTCGCGGTTTACACTTTGTAACACAAAGTAATTAAGAGTGTCATTCGTAGGACTGGGTGAAGTAAAGGTACCCAACAGCAGAATTAGTCATAGATTTAAGACGTCATATTTACCCCTATATAAAGAATACAgccaataggccattttcgatatattaaaattctaagttggttctgaggcttgggggaataaacaaaagaaattaattattcatccctgaacctcaatatgatttcttttgttttatacccccaagcctcggagccaagttagaattttaatatctCGGAATTGGCCTATCGCAAGAAAAGAAAGCGGTTGCCTCTTCCAATTTTCATCTGGATGTGGCGAAATTAACGTGAACTGTATGTTTAAATGTACGCTAATTGTCATCTAACTTCTCCTAAAAAACTTGCAAAGGCCTCAAAAATTACTCTAACGCAATATAAGTTTTCTTTCACCTATTCGATGTGAATTAAATCAATACAGGTATGAAAAATGTCAGACTGTGACTTATTTCTCTCCTGAAAGGGAGGCTTCCTTGATGTCTCCTTAATCAGTGTTGGGTTTTCCAGCTTGCTCAATGCAATATGAAAATGACGTCAAAATAGAACACCTTTATTGTTATCCACAAAGCTTTAGAAACAATTTCATTTCCAATCCACATCTTCAAGAATCTCTCTGTGACGACACAACGATTCCCGCTAGAGGCGAT

Protein

Uniprot

Uniprot term	Description
Q8JG38	Fibroblast growth factor receptor 2 OS=Danio rerio OX=7955 GN=fgfr2 PE=1 SV=1
Q04589	Fibroblast growth factor receptor 1 OS=Rattus norvegicus OX=10116 GN=Fgfr1 PE=1 SV=1
P11362	Fibroblast growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FGFR1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26107	FGFRL1, FGFR5; fibroblast growth factor receptor-like 1	-	Signaling proteins	-	deepkoala