Gene detail

Detailed information of FUN_005438-T1 in Siderastrea siderea

Genomic Location: contig_4:6639823...6659698
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005438-T1

TTTACACGAGTTATTTGCGAATTTTCCAATCCAAGAATGAAACGAAGGAGAACACGCACGCCTTCAGATGCAGATGCCCAGCACACAGGAAACCTGGAGGATATGGAAGTGGAGAGGAGAAGCGCTACAAGTGATGTTGCTTCATTTGAGAGAGGAACGGAGGAGATCAGAAAGCTTTTGTCTGAGATTCAGAACCAAAAACTCGCGGATGCTGACACAACTGAGTCCAGGATCAGGTGCACCCTGCTTTTTACAATCTTGAAAAAGCTCAACAGACTTGCTCATATGAGATGTAAGAAATCCAGAGAAAGAACCCAAGAGgCCAAACAAAAGGTGGACAGCCTTCACCTTCAGTTGCAAAATCTTTTGTATGAAGTGATGCacttaaagaaagaaattactaAATGTCTTGAGTTCAAGTCCAAACATGAAGAAATAGAACTGGTATCAGAAGAGGAATTTTACAGAGATGCACCTAAAGAAATATCTAAACCTGATGTTACAAAGGACGATTCTCATCAGCTGATGTTGGCAAGACTTGACTGGGAGttagaacaaagaaaaagGTTAGCAGTGCAAAAGGAACAATTTCTCAAAAAGAAGGAAACATTCTTGAAAGAAATTCACACTAAGAAAGAATTCTTGGACAGTTTACAACCAAGActagaaaatattttaaagGCTACCCAACCTGTCCAAGAGTACATGAATATGCCATTAGATGCTCAACGAGTGCAGCACGAAACAGCTCGTTATCTTCCACAGCCTCTGTACATTCTGTATGTCCAGGCATCTGCCTACAGTGAGGCATGTGACCCTAATTTGGAAGTCAGAATTCTGGGTGATCTGGATGTTGCTAAAGCTGCCATGGAGGCAAAAACTGCTGCAAGAGAGGTGGACAGTGACTCAGACCAAGAGGCACCTGATGGACACAAAAGGTCAAAACACAGGAGAAAAAGGGAAGAAGCTCGTTTGGAGGAGAAGAGAAAATTATTGCTTAAGAAACACCCACTTCAAATTCAGGTGCAAGTTCGATGCAAAGACAAAGCAACAGTAGATTTGTTGTTCTCCTTTTTGCCGACATTCAACACTGTTGTAGTGTCACCATCTTTGTCTTTAAATGAAGCTGTACCAGGACCCGTCTTGGCAAACAGTGCTCTTCTCTCCCCTGATTCGTTGTTAACTTGTCTGTTTCCTGATGATGGCGGTGACAAGGCACCGAACCCGTCCAGTCTCTATCAACTTTCAAAAGTGGGAATTACCAGTTTTGCAGAGTTTGTTACTCTGGTAGGCaagccttatatgtgggctcaGAGGATTTGTGGACTGGACTTCTTGCCTGAGGAAATAAACGAAGTTGTTCCCAAATCATCAGTAAGCTTGTCTCACATGGAAGCAACAATTAAAGCCATCAGGACAAGAATCCTGGCGAGACTCGCTCTCCAGCAGCAGCTTACATCTTTAGAGAGTCTGACTATTCCACTAAACAGAAATTCTCTTCAAATGTTCCCGAGCAAGATCTCGTCAACACTAACTTCCTGGAAACCCGCAACTTTGGAAGAGTTTATGGAACAGCCAGTCTTAAGAAGCCTCGTCGATGACGGTTTCATCCAAGAAAATGACATGCTTTATCAAGCGGTGTTTGAAAGAAGCAAAGTTCAGCTCAAGGCTGCAGTAGTCTTGTCTCAGGAACATCCAACGACGCCACCATTTTTCTCAGTTGAAGTATGTTGCGGAAAGTCTGTGATCAGAGACAGCTTCACAAAGGCGATGGAGGCAGAAGTAAATGTTTTCTATCCAGAGCTTACCGAGCGTGATTCCTCCTTGAACCTCTTAACCAATCAGCTACGCCGTTTACAgATGTGTTTTGATATTTATTTGGAGTGCGGTAGCCTGAACGATGTGGAGGGCGCTGAAACTTTCGATCGGGAAAAGTTCTTTCTTCGCGTTAAAAAgGGCAGAGATCGTGGCTTACCTCTAAAGTACGATGGAAATCAAGGACTGTTTACTCAAAGATAACAAGAACTTCTGAACTAGAATCTCGAAATGATTATTTTGAGACCAGTCAGCCCCTTTGCACTTTTGCAAAGCATTTCACAATGTTGTTAATTACATTCTCTTCCACATCGGAAAGTCCAGCGTGTATGTGTTGAAGGGGTGGGTTTCGAACGTATGGCTACGTCCCAAGCGTCTACTTCATTATAACACTTATTTCACCTCGGATATTTCGAAAACCCTTAAATCGCACCACATTTGCGTCCCTGGAGAGAGTTTTTCTATAATTTTACGCTCGATATTTCGAACTGACGTGGAAGAGGCGGGACAAACTATTTTTCTCAGTTCTGTACTGTCATCTGTTACAGTTGTCTCGACTCCGTTCTCTCTGGAAAGATATCACCATGGTCTGAATTAAAGAAACGATAAAATAAATTATCGATGTAAGGTTGAAACATGTAATATCATTTTGACGCATTTTTCAAATGAGACCTCAGAGGACCGTCATTCTCTCCACAGTAGTGAAAGTTTGGAAGAATGGAAAACTGTTGCGCAAACACCGAGGAGAGGGTACCTCCACTGTTTctggggtgagttgcataaaacctgaCGCCGGGCATAACTGCTAACGTTAGGCGTTAACATAGTGACTTTAACTAGAGTGAATGTCTGACGTTAGAAGGTGCGCCGAaggttaagttttatgcaactcgcccaTGAGCTTTTGTATAGGGGTGAAGagggttttttcttttctttttaatttttagcctcCGTTAGCTCCCAGTCCCCCCTTTTTCTCCGACGTTCTTGCTCCCTTATCCCTCCCCCGTTTACGCCTGTAGGCAACACTTGCGCTGTCAGCTAATAAAGGATATGGAAAAACACTTCTATTGGTCTGAAATATCGTCGGGGGTTTGAGAACTTGCAGATCCCGACAGAATTAATGTCGGCTCTTTCCAATTTGTCCTAGGAAGTGCGAACTAAGCACCGAGGTTTAGAAACCTACCAGTTCCGAAATTGCCAGGAATAAACAATTGTTACAGTAGTCCCTCATTGTTACTTATTTTGGGGGGGCTTGGTTATCACTATTTTTTGCATTGCAAGAAAAGCGCGAATTTAAAGAGCTACGAAACAATGTTCTCGTGAATATTAACGTCGCGAAAAAAGAGGTAGCATCCGTACATGATAATTCTGGACTCTTGAGTTGGAAATAtacttttaattgtttattaaTTCATGTTGTGAATCAATGcaacagcgaaaaaaaaaaacgaaatgaaGATATGACCATCAgagttgtaatcgcaatttaagcaacTGCGAATTAAAcccgaaaaaaataaaaaatgcgattacaactgcgatggtcacatcttctgtatttccgcagttcagAGCATTTTCATTCTATGTTTCATTCCTTTCACGCGTTAACATGAACTCAATGACTTGGCCCGCTCCCAATGTTGGGTTGGAGGAACACTGCAGCGCGAACGCAGAGgccatgggttcgaatcccgttgaagccccgaaaaccaatttttttctggcttacTCTTAAGTGCTTAAACTGCCATTACAACTGCGagggtcacatcttcatttcatccGTATTCCCGCAGTTCACCTCGTTTTCATtctaagagaaaaaaaatattgtttatgCTGACCTGTGTGGTATAGCAATGTGCTTGGTCCCAAGCGGCAAATGAATAATGTCAGCCTGTTTTAGATTTTGTTGACGTTGTTAGCTGACGTTGATTACATATATACACACAACAGCATTtgaaaatttgcttatccgatTTTCGTGAAGTTAATTTCTCGCGAAAATTAGTAGCACTAGGATAATATAACTGTTCACCGGCATGAAAGGATCTACGAAAGGGAACGAAGGAAAAACAACTTGGAACGAATGATGAGAATGAAAGAAAGGGATAAATGCATGAGTGATTGATTTAATTCTTTAATAGCAGACAGTGATTGCAGAGATTAAAATCTCTTAAGCTTTGTTATCAGCAATGTTTTTTGCACTAATAAACACCGGCTTAACAGCTTTTTAATTTTGAAGTGCTTTCTTATCCTCTAtgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09766 all species →	FmiP_Thoc5	Fms-interacting protein/Thoc5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019163 all species →	Family	THO complex, subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13375 all species →	FMS INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000445 all species →	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0032786 all species →	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13174	THOC5; THO complex subunit 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.