Detailed information of FUN_005468-T1 in Colpophyllia natans

Genomic Location: contig_6:8394982...8438384
NR annotation: XP_020607071.1, protein RRP5 homolog [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q14690Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3
A7MB10Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1
Q6NS46Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05843SufSuppressor of forked protein (Suf)RepeatInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR003029DomainS1 domainInterproscan
IPR048059DomainrRNA biogenesis protein RRP5, S1 domain, first repeatInterproscan
IPR008847DomainSuppressor of forkedInterproscan
IPR048058DomainrRNA biogenesis protein RRP5, S1 domain, eleventh repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR045209FamilyrRNA biogenesis protein Rrp5Interproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14792RRP5, PDCD11; rRNA biogenesis protein RRP5-Ribosome biogenesisko03009deepkoala

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