Gene detail

Detailed information of FUN_005476-T1 in Siderastrea siderea

Genomic Location: contig_4:7090263...7103717
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02746 all species →	MR_MLE_N	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	Domain	Interproscan
PF13378 all species →	MR_MLE_C	Enolase C-terminal domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013341 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR029017 all species →	Homologous_superfamily	Enolase-like, N-terminal	Interproscan
IPR034610 all species →	Family	L-fuconate dehydratase	Interproscan
IPR046945 all species →	Family	L-rhamnonate dehydratase-like	Interproscan
IPR029065 all species →	Domain	Enolase C-terminal domain-like	Interproscan
IPR018110 all species →	Conserved_site	Mandelate racemase/muconate lactonizing enzyme, conserved site	Interproscan
IPR013342 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13794 all species →	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016052 all species →	Biological Process	carbohydrate catabolic process	Interproscan
GO:0050023 all species →	Molecular Function	L-fuconate dehydratase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan
GO:0009063 all species →	Biological Process	amino acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18334	fucD; L-fuconate dehydratase	EC:4.2.1.68	Fructose and mannose metabolism	ko00051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.