Gene detail

Detailed information of FUN_005488-T1 in Dendrogyra cylindrus

Genomic Location: contig_5:7874782...7883797
NR annotation: XP_027059255.1, COP9 signalosome complex subunit 5-like [Pocillopora damicornis]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PC30	COP9 signalosome complex subunit 5 OS=Danio rerio OX=7955 GN=cops5 PE=2 SV=1
Q92905	COP9 signalosome complex subunit 5 OS=Homo sapiens OX=9606 GN=COPS5 PE=1 SV=4
O35864	COP9 signalosome complex subunit 5 OS=Mus musculus OX=10090 GN=Cops5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007666 (this species only)
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species
Ubiquitin family	DUB\|JAMM\|JAMM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF18323 all species →	CSN5_C	Cop9 signalosome subunit 5 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR040961 all species →	Domain	Cop9 signalosome subunit 5 C-terminal domain	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0000338 all species →	Biological Process	protein deneddylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0019784 all species →	Molecular Function	deNEDDylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09613	COPS5, CSN5; COP9 signalosome complex subunit 5	EC:3.4.-.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.