Gene detail

Detailed information of FUN_005706-T1 in Siderastrea siderea

Genomic Location: contig_4:9978105...9992922
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005706-T1

CTTGAAGCCGGTTGAAAGCAGTTGCCATTCTTTTTCAATAAACAGATTTATAGCTAAGGCGTAACACCAACAACTGATAAACATGTTCGGTACAGCAAACAAAACGTTTGGTGGCACAACGAGTTTTGGAACGTTTGGCTCCACTTCTAGCACAACAAATACGCTCGGTCTTGGGACCAGCGACAACCCCATGAAAGATGTGGAAGTACAAGCTCCTCCGGATGACACAGTTAGCGCGCTGAAATTCAGTCCAAAAGCAGACTTTCTCATCGCCTCGTCTTGGGCGAATGATATTCGGTGTTGGGAAGTCAAGGAAAATGGACAAACCATTCCAAAGGCACAGCAGACTCACACAGGTCCAATTCTGGACTGCTGCTGGCATGATGATGGGACAAAAGTATTTACAGCATCCACTGACAAACAGTGCAAAATGTGGGATCTTAATTCTAATCAAGCCGTGCAAGTTGCACAGCATGACAAAGCAGTCAAAACATGTCACTGGCTTCAGGCGCCAAACTACAGCTGTCTTATGACAGGCAGTTGGGATAACACGGTAAAATTCTGGGATACACGGTCACCAAACCCGATGATGGTGTTACAAATTCCTGAGCGGGTGTACTGTGCAGATGTGGTGTATCCTATGGCCATTGTGGGAACTGCACAACGGGGTATCATTTGTTATCAGTTAGAAAACCAACCCTCAGAAGTGAAAAGGCTAGAATCTCCATTGAAATACCAGAATCGCTGTGTTAGTATTTTCCGAGACCCTAAGAAGAACAACCAACCTGTAGGATTTGCCCTCGGCTCTGTGGAAGGAagagttgcaatccattttatTCAGCCACAGAATCCGAAAGACAACTTCACTTTCAAATGTCACAGATCAAATGGCACCGGAGCCAATGTTCAGGACATTTATGCAGTAAATGATATATCTTTCCACCCAGTTCATTTTTGTTTGCTGGCCACCGTGGGATCAGATGGGAAGTTTAGTTTCTGGGACAAGGATGCACGCACAAAGCTGAAAaCCTCTGATCAGCTGAACATGCCAATAACAGCCTGTTGTTTCAATTCAAGAGGAAATATCTTTGCCTACACATCAAGTTATGACTGGTCCAAAGGCCATGAATACTTCAACCCCCAAATCAAGCCCAAAATTTTCCTCAGAAATTGTGCAGATGAACTGAAGCCCAGAAAAAAGTAGTCCGATAGTCCGAAAGAACCCCTAGCAACTCTCCTGCGGTGAAGCTGACTTAACCACACATGGACGTTCTCCTGCATATAGCAATGGAAGAAGACTAGGGggaaaacaaatgtttttttaCGGTTTAAGTCCACATCTTCAAAAGCTAGGGAGGAAGAACCTTGATGAAGAAGCTTTGGTGCAACAGTCAGTGAAATAAGAGACAGTAAATGAGAGGGCTCAGGACCAGGTGTTTGCTGGCTTAGGAGTCAACATTATTTAAGTAAAGACTGGCTGGGCATGGGCGTCACTGTCAGAAATAGTCGTGTTTTGTTCAGAAAGTTATCGGTGCCTTTGACGTCAGATGTCCCTGAAAGGAGGGTGTTGTGAATCCTGTTTAACCTTCATTGTTGTACGATAATGTCTAATATCTTAGTCTTGTGACAGCTGGAGGTGGGAAATATTATTGGCCAAAGTTGTGTCATGTTTTGCCATAGCTAAAGTGCAAAAGGGCCGGAATCGGCAGAGAAGGGACGGGAAATGCCTGTTTTATTTTCCTCAATAAGTGATGTATATTCCAGCCCACCCACTCCCCCGAACACCAGCACCACCGATGGCGAACTTCCGGCAGAGAAGATATAAATTGTAAACAGTTGGCAATAATTAACCAATTTACATGTACTTTTTTCTTACTGATATCATTTGTAACTGCTAATAATACTGACGTAACAGAAAATTAAAAGTAACTTTTGTGTTACTGACTCTACCCTGGTCTCTCTTAACCCCTTAAGCCCTGgcataaaaatgcatatt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10971 all species →	MRNA EXPORT FACTOR AND BUB3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14298	RAE1, GLE2; mRNA export factor	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.