Detailed information of FUN_005736-T1 in Siderastrea siderea

Genomic Location: contig_4:10435326...10447942
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_005736-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR037813
all species →		FamilyTranscription initiation factor TFIID subunit 2Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15137
all species →		TRANSCRIPTION INITIATION FACTOR TFIIDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0005669
all species →		Cellular Componenttranscription factor TFIID complexInterproscan
GO:0006367
all species →		Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_005736-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_005736-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
65TPM > 0
7Conditions
1,067.2Max TPM
280.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 321.99 865.86
holobiont · low.pH Control.temp 20 11 195.18 668.35
holobiont · control.pH_high.temp 20 17 370.51 1,067.24
holobiont · control.pH Control.temp 19 15 311.31 610.91
Whole organism 4 4 27.67 34.25
unannotated 1 1 21.47 21.47
live coral tissue/skeleton 1 1 19.54 19.54

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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