Gene detail

Detailed information of FUN_005783-T1 in Dendrogyra cylindrus

Genomic Location: contig_6:2493608...2497474
NR annotation: XP_020610149.1, NACHT domain- and WD repeat-containing protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_005783-T1

ATGAGTGACTACTTCTTCGGCAAATGGTCAGGTGGAGTGAAGAAGTCGTTTGTGGACAAGAGTGGAAAAGAAATGTCCATGGACcgactggtacccaaacaaccGCTTAAGTTCGACGGTAACGTCGACAAACCCATTTTTAATCGGCGCATGCTGAGCGAACTCCCTCATCACCTTCTCCTCTCCAACCAAGTGGAAAAGCTCAAGCAAGATACTCTGTGCAACTTTGAATTTCTCCTGACTAAGGTCCAAGCCAGTTCTGTGGAGGGGCTGCTACAAGATTTTAATGCTGCTCTTGCCATTCATGCAGATGACAGAGAGTTTGATCTCCTCAACAAGTGCCTTGCCCTGTCTGCACATGCACTCAGGCAGGATCCTCGTCAACTGCCAGTGCAGCTGATTGGCCGTCTGCACAAGTACAtgaagaaaaaagaatttccatttctgaagaaGGTGTTGGAAGATGCACACAACCCGTCTGTTCCCGCTTTTATTCCCAGTCAGCAATGCCTTACACCAGCTGGAGGATCTCTGATAAATTCACTATCATCTGAAGACTTCCATGGTGGAATCGAGTACGTGAATTTCACAAGTGATTCCAAGACAGTCGTGACCAGCAATCGCGGTTCAGAAGGCTTATGCCTGTTGTACCTGGATATTAAGAGTGGACGGAGGCAGCGAAAGGTTTGCTTCGACGATCGGGAAACGGATGTGAATTCGTGTTGGTGTGCGATGATCAGCAAAAAGAACGATGACGTCTTCGTGGCATCGGGTTCTTCGTCAAACATGTACCTCATCAATGCCAGGACAAACAAAGTCTTAATGGAGTATAAGCCAATGAAGGATGATGGAAACTGGTTCAGAGGTTTTCCTTCCGTTGCGTTTGCTGATGATGACGAGCTGTTGGTGGCCCTCGGCGACGCTGGTGTGCGAATCTGGGAGACCGAAAGTGGGAAGCTTCTTCATGACATTTCTGTCAAGGGCATTAATGTTGAGGAAGAATTTGGTCATTTGGACGCGACAGGAGACCTTGCTGTCTACTGCCTACACAACAAGAAAACAGTTAACGTTCTCAATGTTAAAACTGGAAAGGAAGTGTGTAAGATAAATGTGGACTTGAAAAAGGAAGATATCCGAGGCGAGATGAAAGAGACAGAAGTGACCCAAATCCACCTTACTTCCAGGAAGCAGTTGCTTGTGGTGTCAGACGGTTATATTATAGATCAGCTGAAAGTGTATGACGCTACAACTGGCAAACACATCAGGGATATTCCAGAGTTCGGCATTGGCCAACACAACCGCCTTGTAGTCTCAGAGGATGCAAAGACGGTGGTTGCTGTCAGAAATAAGTACGAGCTTGTAAAATGGGACCTTGAAACAGGTGACGCCACCGTCGTTGCAAGGTTACAACCAGCCTTTGGTGTTTACGGGCGCAGAGGAGATGTTATAGCAACTGCCGGATCGGATGGAGTTCTCCGAATTTACGACGCGAGAGAAAGCGTTGACGAGAATGAGACGGATGTTAGTGCCACCACGCAGGGCTTTGCTGATACAATATGGATGCTTACAGTTGCAGCGGACAATCGGCATGTGATCGCATGCTGCACCGTTAAGTACATGCCTGAGATTGCAGTGTGGGATGCACTTGCTGGGGTCAAAGTCCGTTCACTCAAAGCAATGAACTATCCACAGCCCTTGCGCATGCTGAGCGACAAGGTTGGTGTTGGTCGAATTGCAGTGGCAGAGCAAAAGAAAGATAGCTTTGATCACTACAAACTAATGGACTTTGACCAAGCAAAATCTCTCCGTGTACTGCAAGGAAAGTCCAGCAAAAGAATCGAGGCCGTTGGGCTTATTGACAAGAAGAACGTCATCGGGTTGTCACGTGGCAGACGTAACTTGAAGGTGTGGAACGTCGATACTGGCAAGGTTGTTGGACAGTACAAACTTGGCCAGAAGTATCGTTTGGAAGGAATTCTTATCAGTAAAGATGGTAGCACGGTGATTTGCTCCCAAGCCAGCTTCTTTGTCCAGCAAGAAGACACAACAGTTCCACTACTAGTTTTTAACACCAAGACGCACGAACACAAGGTACTGGATGCCATTAAAGACGAGCAGTTGGGTTTGGATGGTTCCGCCATTACAGAAGATGGTAAATACTTTATCTTGCAGCTGAGAAATGAGCAGATAAGCGCGATATGGGACACAGACACGGGAAAACTGATGCATACCTTAAGTGAAGGTTCCAGTGGAAGGAACATGGTCGCGATTTCATCGAAGAGCATGCTTGCTGTGACAAGTCACGAGAGCCTTAAAGTTTGGGAGATCCAGAGTGGAAAGCTTCTTCACGACCTCGTCTCCACTGACATCGACAAGATCTACCTCAACCACGACGGGACCATTGCAATAACCACAGACATGAAAGGGTACCAACCCAGCTCTTTTGAGGCATGGGACCTGATCAAGGGAAAAAAGCTGACAACGTTTACCGTGGACACAAACCCGTTTGTAGTTTACCCTCTTGGTGATCAGATCGTCTTCGCAGCACCAGCCAGCGTTACGGTCCAGACGCTGAGATTGCACATTCCTGGACGCGAGGAGAAGAAGCCAGGACCATCGTCTTATGGCAACCACAAGGAGATAGGTGAATTTAAAGGAATGTTGGATCCTTGTGATCCTAATGACGTTGACGATGACAAAGACGATGATGATGGCGACCTTCGATAG

Transcript

FUN_005783-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13360	PQQ_2	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011044	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002372	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR052752	Family	NACHT and WD repeat domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19871	BETA TRANSDUCIN-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan