Gene detail

Detailed information of FUN_005826-T1 in Dendrogyra cylindrus

Genomic Location: contig_6:2946645...2949886
NR annotation: KAJ7363311.1, Metalloproteinase inhibitor 3 [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_005826-T1

ACCTTTCTTTTCTGTCAAATGTATGAAATTATCTTTTGCGGAGTAacttttgacaaagttttgagATCTACTTTGACGGACAAAAGCAGAATGAACTTGATAATCTATTGTGTTGCTTTTCTGTTGAGCGCTGTGACTGTGGCACAGAATACTGCATTCATCTTGAGGCATCCGCAAGAACAGTTCTGTTCGGCAGATTTCGCGGTTCGCGCCATGGTCCTACCAGAAAACCAGACAGCGGAAGGGTACAAATACATGCGCGAGTACGATCTAAAATTCCTGAAAGTCTACAAAGGAAGGGACAGACTTCTGAACACCGAAGACATTAGAGTCAACGGTGAAAACATTACCGTCAACGGTGAAATCGGTTTCTTCGCGAAAGCCTACACTTTTGGTGTGGAGCCGCTTAAGAGCAGCGTCGAGTACCTCCTCGCTGGAAGCATTAAGATGGAGGAAATACAACTGAATTTAGGCAGTTGGATTCAACCGTGGCCAAAGGTCACTTTGGAACAGCGCGCGGGACTCCGCGGGATTTATGCCCGAAACTGCCGGTGTCTAATCACGACTTGCTACGGGATACCCGACTGCGATCAGCTGCTCAAGGGATGCAACGTAACTGATCAACTGCGGGATTTTTATCAGGGCTGTGAATGGCGTCATTCTTACTGTTTGAAAAACAGCAATGCAACCGCATGCTCTTGGCATGAAACCGCTGCCTACAAGAACTGCATGAACCCGGGATTGCCTTAAAAACTGATCATTGACAGAGAAATTTGTATTTGGTATACCAAGTTATAACATCGAATAAAATTGCCACGATTGCAATCGCATTTTTTGCTCGCAGTTATCTTTTCTCGCTAATCCACGTAAGCGAGTGTATGAAAAGGCATGCAGGAAAAGCAGATCTTGCAATTTCACATACactgttttgttttgatatGACTTTGTAACATTCAAGGAGGACATTTTAAGTGAATTTTCATGAAATGAGATGAACGTGATAAAAGTTTAGGGACTCACACCACTAAATAGACCATCCTAGCACGAGATAGCAGGCTAGGTTGATGTGCATGTTGAAATCTTCGTTTTTCCCTATTTATTTCAAATCCTCTAATCCCTCCCTTTTTCCTGTGTCAAAAGCAACTTAAAAATCTTCGAAAAATTTAACGTTTGTGGCACCTTCCACTACAATTTTGGTGATGGCATTTTTCGATAGCATGAAGCCTCGAAGAGATAACGAAAAAATTGCTAAAACGTACGAAAATCATAGCATTCACCGTTAAGTTTAGAACTATTCCCTTAAAACTTAAGAGTTATTTTAAGCATCACAAAATATTAATGTTTGCAATGCTTTAAATACTTCCACGCGCACAACAGAGCCTCTAGTCTAGATTAAGCAATTTCTTCGAATATCATCCACTTTTTGTATGAAATTTAGCAGGCTTTTACAGTTATGCGAGTCGTCTTGGCGGACTTATAAAGCAGCCGATATTATTACTAAGCTGTGGTATCTACAGGAAAAAAATCAAGTCAGGGTTTTATAACGTCACCCTTTGCGTATTATGTTATCACTTTTGTGAAGATGTTGTTGCGCAATAAGTCGAAATAAATAGCAAAACGCAAAAAGTATGACTGATGTTCCTTTTAATGTATAGTAACTGCTAtttttcgcgttttttttttttatagattTATGCTTTTAACCATGCGACTTGGGACTGGATTGTTGGATTTTTCACGGTCATGTTACTAAAAGGCGTTTCCATTTTTCCGAATGTTTCAAGCGTAAACAATTAGAAGCttctacaaaacaaaatgttgtTTTAATCGTTGTCTCGACTAATTTTCACTGCGGCTACGTTTTCAATTTTCGTCTAGACTTTTTTTTACACTCCGTTCGTTTTGCCATGCACCAACTAGTTTTGGTCTGTGGACATTCTTTAACAGTTTACTCTTTTGTATAATAAATACCGACGCTTAACAGCTGTCGTGCTTTTTTACATTATTATGGTACCTgatgtgttgtttttgataccTTTGCTTAATAGAGACCCTGTTTAAAGGTATTTTTCGAGTTTCGTCCAGTTATCTGCAATCAAACTCGACACAAAGCCCTTAGCAATTATGTGAGCAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VH14	Tissue inhibitor of metalloproteinase OS=Drosophila melanogaster OX=7227 GN=Timp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000880 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965 all species →	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR001820 all species →	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR001134 all species →	Domain	Netrin domain	Interproscan
IPR027465 all species →	Homologous_superfamily	Proteinase inhibitor I35b (TIMP), C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844 all species →	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008191 all species →	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002020 all species →	Molecular Function	protease binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010033 all species →	Biological Process	obsolete response to organic substance	Interproscan
GO:0010951 all species →	Biological Process	negative regulation of endopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0051045 all species →	Biological Process	negative regulation of membrane protein ectodomain proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_005826-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.