Gene detail

Detailed information of FUN_005907-T1 in Acropora pulchra

Genomic Location: ptg000001l:5545920...5558853
NR annotation: XP_029213111.2, plasma membrane calcium-transporting ATPase 2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_005907-T1

ATGGCTGATGAGGTAGATGCAAAGTTCATTCCTGATTTCACTAATACCACAAAGGAAAGGCTGGTAGATCTCATGAGTGGTAATGGAAGCTTGGAAGCTACAGTAGGGAAGTTTGGAAGCGTGAACAACATTATTCATGACCTTCGCACCTCATCCACCAAAGGAGTGATTGGGATTGGTGAGGCTGTTCATCATAGGCAGGAAAAATTTGGCAGCAACTTGATTCCTCTGCGGCCACCAAAAAATATTTTGAACTATCTTCTGTGTGCCATGAAAGACTGGGTCATTTTGGTGCTGTTTATTGGTGGGTTGGTTTCGTTTATTTTGGGTGCAGTTTTCCCAGAGAAATGTGAAGGTCATTACAAATTAGTTGTTGCAATGTATGAGGGAATTGGCATAATGGGTACTGTGGTGGTCATGATTTTGTTGACAGCTTTCAGTGATTATTTGAAAGAAACTGATTTCAGAAGATTGCATGGAAGAATCAACAGAGAGCGCAGAACAAATGTCATAAGAAGTGGGAAAATGACAGAGATCGTTGCACAAGATATTGTGGTTGGAGACCTTTGCCAACTCAGTGTTGGTACTCTAATCCCTGCGGATGGAATCGTTGTGCAACAAAATGGCCTTGTTGTGAATGAATCTGCTTTAACACGGCATAGAGCAATGGCCCCTAAGGAAATGCACTCTCTAGTGTATGCTGGCACTCATGTTGTGGATGGATGTGGTAAGATGATAGTGCTGGCTGTGGGACTTAACACACAGTTGCATATAAAGAGGCAGCAGTCTGTAACCACCCCCACACTCGTTACATTCAAGCCCGCTTTTCCTGAACAATCAGAGTACCCTGATGAAGGCACCATCTCATTTGAACACAAGGAAGACTCAGCTTTGTTGCAAGGGAAGATTAACAAGGTTCAAGTTGCGCTTGGACGCATTGGCATTGTCCTTGCAGTGGTTGCAATCCTTGTGATTATCATCCGCTTCAGTGTCTACACTTTTTCGACGCTTGGATTAGCCTTTGACCCTAGCCACTTCACTGAATACATCAGAGCATTAATAGTTGGTGTCGTTGTTCTTATCATTGTTGTCCCGGAAGCACTGTCATTGGTGGTGTCAACATCATTAGCTTTCTGTGTGAGGAAGATGTACCATGATCAGGCTTTGGTGCGACATGTTGATATGTTAGAAACAATGGGCAACATAACAAATCTGTGCTGTAACAAGACAGGTGTCCTGACCCAGAATCGCAGAGTGGTATCAAAGAGTTATCTTGGTGAAAAGGAGTATCAAGGAGAACCACTGCAGTATAAGGATGACATCCCAAAAACATTATTCACAGAACTATGCAAGGCCATCTCTGTGAACACCAGTTATTTGGCTCAAATCTTGGAAGAAGGTGCTGACAACATTCCAAAACAGGGTGGAAACAGGATAGATGCTGCTCTGTTGCAGTATCTGTTTGAGTTAGGAGAATATTATCAGACCTGGAGGGATTATTACCCTGAAGACAGACTCATCAAAGTTTTTGAATTCACTTCTTGTGACAAATGCAGGACAACAATCATTGATGATGGGCAGGAAGGATTTTATAAGGTTTATTCCAAGGGAGCTACAGAGGTGTTATTGGGATTGTGCACTTCAGTTGTGGCAGGGTCAGGAGAGCCAAGAAGATTTACAAAAGATGATGCTGAAAAATTGTTACAGGATCTGATTAAGCCTTGGGAGAGTCAAGGACTCCGTTTGTTATGCCTGACCACAAAGGTTATCCCATCTACTGATTATAAATCAGAAATGACAGAGAAAGATCTCCTAACAGACTTGACATTGCAAGGAATAGTTGGCATAGAGGATCCAGTCAGAGATCAAGTACCAGATGCAGTACGCAAGTGTCAGAAGGCTGGTATCACTGTACGTATGGTGACTGGTGATAATGTCATCACTTCGCGGTCTGTGGCAATCAAGTGTGGCATTATTACACCAAATGATGAAAGCCTTGTCTATGATGGGGAGGAGTTCAATTCATATATCAGAGATCCTGACACAAAGATTAACGAAGAACGTTTCAATTCCATGTGGCCCAAACTGTGTGTCCTTGCGCGAGCCAAGCCATCAGATAAGTTTACCTTAGTGAAGGGTATGATGCAGAGTCACATTAAACCTGCTGGAGAGATTGTGGCTGTGACAGGCTCAGGAGCTAATGATGGGCCAGTTTTGAGAATGGCTGATGTTGGATTCACTATGGGAGTGGCAGGAACAGCTATCTCTAAGGAAGCTTCTGATGTCATCCTTTTGAATGATGATTTCAACAGCATTGTTAATGCCATTAAGTGGGGTCGGCATATTTACTACACTGTCCTTAAGTTCTTGCAGTTTCAGTTTACAGTGTCCTGGGTTGCTGTCATTGTTGTGATTGTTGGAGCTTGCCTTGTAGGGAAGAGTCCTCTTGTGGCCACCCAGCTGTTGTGGATCAATCTTATAATGGACACCCTGGCTTGCTTTGCTTTAACAAGAGACATCCCAACAGACGATCTGCTCAATTACAAGCCATATGGCCGCCACAAGCCTCTGATCTCACGCACCTTGCTCCGCAACGTGATTGGTCACAGTATTTACCAACTGGTTGTCTTATTTGTGTTGATCTTGAAAGGAAGTGACCTGTTTGATATTGGCGATGGATTCCGTTCTGCCATGTCCTGTAAGCCAGGCCAACATTCCTCCGTGGTATTCACCACGTTTGTGTTCATGCAGCTGTTCAATGAGATCAATGCGAGAATGCTCCAGGAAAGAAATGTGTTCACTGGAATCCACAAAAACTATGGTTTCTTGATCATATGGGTTGCTCAAGCTGCCATGCAGATCATCATGGTACAGTTTTTTAACACAGCATTCCATGTGACAGGAATGGACTGGGATCAATGGATGTGGTGTTTATTCTTGGGCTTCTCAGAGCTTCTGTGGGCTCAATTGATCTTCACCATTCCAAAGGATGTCCTACCTGCCTGGATGCGCTGTGCGGCTGATGGTGCTCCACAAGGTCGTGGTATTGCTTACATGAGGAGCTGTTCAAGAATGGAGCAGACGGACAGTGGAATAAAATCATCCATGCTGAGTCCACTGACTGATTTGCCATCAGAGCCACAATTTCCAGTTCCTGAAGTTAGAGAAGAGAGGCTTCCACTTAGCGTAGAGTAG

Transcript

FUN_005907-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0K7	Plasma membrane calcium-transporting ATPase 2 OS=Mus musculus OX=10090 GN=Atp2b2 PE=1 SV=2
Q98SH2	Plasma membrane calcium-transporting ATPase 1 OS=Gallus gallus OX=9031 GN=ATP2B1 PE=2 SV=2
P23220	Plasma membrane calcium-transporting ATPase 1 OS=Sus scrofa OX=9823 GN=ATP2B1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00690 all species →	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR006408 all species →	Family	P-type ATPase, subfamily IIB	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR004014 all species →	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24093 all species →	CATION TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005388 all species →	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05850	ATP2B; P-type Ca2+ transporter type 2B	EC:7.2.2.10	Endocrine and other factor-regulated calcium reabsorption	ko04961	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.