Gene detail

Detailed information of FUN_006001-T1 in Colpophyllia natans

Genomic Location: contig_7:4208739...4211027
NR annotation: XP_020632409.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_006001-T1

ATGTCGAGTCACAAGACTTCACTATTTGAGGCGATTTCACTTGCCAACTCATTTCGTGTTCCGCTTACAATCATGGATATAAAAACCTTGCTAAACAATCTTCATGAAGAAGTATCCTGTTTTGTGTGCATGACCACATTCACAGATCCAAAACAACTGCCATGTTTACACAGTTTTTGTCTTCACTGCTTGAACGAGATTCTACGAAGAAGTGGCCGCCATGATGTCGTGACTTGTCCAGAATGTAGAAGAGAGTGCAGAGTTCCTGGCAGTGGAAACCTGGAGGATCTGCCGACCAACTTTCGCATCAACAGTCTCCTAGATGTGTTGGCCATCAAAGAGTGTAACACTACGGCAGTCAAATGTGGCAATTGCGACAAGAAGAGCTCCAAGAGTTTCTACTGCTTCCAGTGTTGTGCTTTCTGGTGCGAAGCCAACTGTATAAGCCTTCATAATGGAATGAAAGTCAATAAAGAACACCGCGTGTTGGCGCTCAAAGACTTTCAAGACGAAGACTTCGAGAATGTCTTAAAGCGGCCAGCATTCTGTAGAAAGCCTAGACATGAAAAGAAAGAACTGGAATTCTTTTGTAAAATCTGCGAACTTTGCATTTGCAACGCTTGTGCCTTGACAGATCACGAAGGTCACGCCAAGATACTTTTGGAAGAAGCTGCAAATGAACGCAAGTTACAAGTGAAATCTGCCACTGAATCTCAGAAAGAAAAATTGGAAATGAAGAAGATTGAAATCACCAAAATTGATGAAAACTGTGCTAAGATTCAAGAACATGTCGCATATGTGAAACAAAGCGTGCAGCAGTTTGTGGAGACAATATTTGAAGTCATCGATGCGAAGAAGCAGGAGATCATAATTGAAGTTGAGAATCAGGCAAAAGAATCCCTCCAGCGCCTTGAAACAAAAAAGGCAAAGATTGAAGATGAGGTGAACATGGCCGAGGGAACACTGGACAAAGctgaaacacttttaaaacGAAGTGGAAGCGCCGAAATCATGCAGCCGAACAAGGttctaaacaaaatatttcaggaGGAAGTTGGCCAAGAAAACTCAGCCGACGGAGACGAAAAAATTTTTCTGGTGTTTGATTTCGTGAAAAATCAAACGTTACTGGAGAACGTTAGCACTGAAAAGATTGGCTCCCTCAAACGCTTTCTTACCGAGACCAGACCGCATCTGTCGACTGTCGATGGAAAAGGAATCAATGAAGCGTTCGTCGGACTTGAAGCAGAGTTTGTTTTGACGACAAGAAATGCTGAAGGAGAACAATGTTATGATGAGCGTGACTGCGTAACAGTGGAAAGAAGTCATCAACGCCATGATTGTGGGACGAAAGTACGAGTCGAAGATAACAAAGATGGCAGTTGCAAAGTCAGCTATCTTACCAAAGAAACTGGACAATTTGGATTATCAGTGAAGGTGAATGAAGAATATGTCCGTGGCAACCCTTTTACTGTGGAAGTTAAACCCAGACAGTTCCGACCCGTACTATCGTTTGGACAAAAAGGCTCGGCTGTAGGAAAGCTTAACGGCCCTTGGGGAGTGGCAGTGAATGAACGTGATGAAATTGCATGGACTGACCATGTTAACCACAGAATTCAGGTATTCCGCAGTAGTGATGGAACTTACTTAAGATCGTTTGGTAGACAAGGTGATAAACACGGAGAATTTAACTTTCCTCGTGGGATAGCTTTTAATGTAGAGAATGAGAATGTTTTAGTGGCGGACACTAGAAACCACCGTGTTCAATTGCTCAGTGAGCAGGGTGAGTACCTGAACCAGTTTGGTGAGGAAGGAAACCTTGATCATCAGCTATGTTATCCATATGGCTTGTCTGTTAACTGCGACCGAAATGTTATTGTTGCAGATTCAGGTAACAAACTAGTTAAGATCTTTTCTCAAAGTGGCCAGCTTTTACAGAAAATTGGCGGGGACGGCTCTTTTACCTTTCCCATCCACTGTATCCAATATGACAAAGTGCACGATAGGGATGGGAAGTTTCTTTACAAGTTTGGAAAGAAGGGGAAGGGGCGCGGGGAGTTCAATGATCCTTGTTGTTTGTCAGTTAACAAGGCAGGACACCTTATGGTCTGTGATACATTGAATCACAGAGTTCAGGTGTTTGAACTGAGTGGGAATTTTGTGGCACAGTTTGGAACAAAAGGGAGTGTGATAGGAGAGTTCAATCGCCCATTCTCTACAGCAGTTCTTAGTGATGGTAGGATAGTTGTGACTGACTGCTGGAACCATCGTATTCAGATTTTTGAGTAG

Transcript

FUN_006001-T1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan