Gene detail

Detailed information of FUN_006009-T1 in Colpophyllia natans

Genomic Location: contig_7:4291601...4299060
NR annotation: XP_020632409.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_006009-T1

ATGGACATAAAAACCTTGCTAAACAATCTTCATGAAGAAGTATCCTGTTCTGTGTGCATGACCACATTCACAGATCCAAAACAGCTGCCATGTTTACACAGTTTTTGCCTTCACTGCTTGAATGAGATTCTACGAAGAAGTGACCGCCATGATATCGTGACTTGTCCAGAATGTAGAAGAGAGTGTAGAGTCCCTAGCAGTGGAAACCTGGAGGATCTGCCGACCAACTTTCGCATCAACAGTCTCCTAGATGTGTTGGCCATCAAAGAGTGTAACACTACGGCAGTCAAATGTGGAAATTGCGACAAGAAGAGCTCCAAGAGTTTCTACTGCTTTCAGTGTTGTGCTTTCTGGTGCGAAGCCAACTGTATAAGCCTTCATAATGGAATGAAAGTCAATAAAGAACACCGCGTGTTGGCGCTCAAAGACTTTCAAGACGAAGACTTCGAGAATGTCTTAAAGCGGCCAGCATTCTGTAGAAGGCCTGGACATGAAAAGAAAGAACTGGAATTCTTTTGTAAAATCTGCGAACTTTGCATTTGCAACGCTTGTGCCTTGACAGATCACGAAGGTCACACCAAGATGCTTTTGGAAGAAGCTGCAAATCAACGCAAGTTACAGGTGAAATCTGCCATTGAATCTCAGAAAGAAAAATTGGAAATGAAGAAGATTGAAATCaccaaaattaatgaaaactgTGCTAAGATTGAAGAACACGTCGCATATGTGAAACAAAGCGTGCAGAAGTTTGTGGAGACAATATTTGAAGTCATCGATGCGAAGAAGCAAGAGATCATAATTGAAGTTGAGAATCAGGCAAAAGAATCCCTCCAGCGTCTTAAAACAAAAAAGGCAAAGATTGAAGATGAGGTGAACATGGCAGAAGGAACACTGGACAAAGCTGAAACGCTTTTAAAACGAAGTGGAAGCTCCGAAATCATGCAGCCGAACAAGtttctaaacaaaatatttcaggaGGAAGTTGGCCAAGAAAACTCAGCCGACCGAGACGAAAAATTTTTTCTGGTGTTTGATTTCGTGAAAAATCAAACGTTACTGGAGAACGTTAGCACTGAAAAGATTGGCTCCCTCAAACGCTTTCTTACCGAGACCAGACCGCATCTGTCGACTGTCTATGGAAAAGGAATCAATGAAGCGTTCGTTGGGCTTGAAGCAGAGTTTGTTTTGATGACAAGAAATGCTGAAGGagaacaatgttatgacgagcGTGACTGCGTAACAGCGGAAAGAAATCATCAACGCCATGATTGTGGGACGAAAGTACGAGTCGAAGATAACAAAGATGGCAACTACAAAGTTAGCTATCTTGCTAAAGAAACTGGACAAGTTGAATTATCAGTGAAGGTGAATGAAGAATATGTATGTGGCAACCCCTTTGCTGTGGAAGTTAAACCCAGACAGTTCCGACCCGTGCTATCGTTTGGACAAAAAGGCTCGGCTGCTGGAAAACTTAACGGCCCTTGGGGAGTGGCAGTGAATGAACGTGATGAAATTGCAGTGACTGACTCTGATAACCACAGAATTCAAGTATTCCGCAGTAGTGATGGAACTTACTTAAGATCGTTTGGTAGAAAAGGTGATAAAGAGGGAGAATTTAAGAGCCCTCGTGGGATAGCTTTTAATGTAAAGAATAAGAATATTTTAGTGGCGGACACTACAAACCACCGTGTTCAATTGCTCAGTGAGCAGGGTGAGTACCTGAACCAGTTTGGTGAGAAAGGAAATCTTGATCATCAGCTATTTTATCCACGTGGCTTGTCTCTTAACTGTGACGGAAATGTTATTGTTGCAGATTCAGGTAACAAACTTGTTAAGATCTTTTCTCAAAGTGGCCAGCTTTTACAGAAAATTGGCGAGGACGGCTCTTTTACCTTTCCCATCCACTGTATCCAATATGACAAATATCTTATAGTGTCAGACTATGGTGAACATTGCATCAAAGTGCACGATAGGGATGGGAACTTTCTTTACAAGTTTGGAAAGAAGGGGGAGGGGCACGGGGAGTTCAATAAACCTCGTTGTTTGTCAGTTAACAAGGCAGGACACctgatggtctgtgatgcaTTCAATCACAGAGTTCAGGTGTTTGAACTGAGTGGGAATTTTGTGGCACAGTTTGGAACAAAAGGGAGCGGGATAGGAGAGTTCAATCTGCCAGTCTCTATAGCAGTTCTTAGTGATGTATTGAAGATGTCGTCGCCGTACACTGTATTCTTTGACCAGTACTGGTTCGATACAAGTCTTCCAAGCATTATCGTGTACATCATTGTGTCGCTATTCACCATATTCTCGAATCTCCTTCTTTGCGTGGCTTACTGGAAAGATCCATTCAACAACCTAAGGAGCGTCCAAAATTACTTCGTTCTCAACTTGGCGATCGCCGATCTTATTATGGGCGCTATTTCGGAGCCTCTTCTTGTAGTGACGTATTGGCATGACCACAACCTCATCTACTTCGTTCATTATCTATTCGCTATCATCTCTGCGGCTTGCTCGTTACTGAACATAACAGCGCTCTCCATAATCCGTTACTTCGCCGTGAAACAGCCTTTTCTCACTCAAAGCATCGTTAACGAGCGGAGTGTAATAGTTGGCATCGGTATTGTCTGGGTCATAGCTATCCATTACGCCCTGCTTCCGTTTGTGGGATGGAGAGACAAAACGTTCCAGCTCTACTTGTATGGCTTGGCCTGCGTGATTCCCACCGTGGTATTTATCGTCGCTTATTTCCTTGTGTACCGTGCGCTGCGTCGCCATACGATCGCGATCAAGGGTCTTGCAGAGGGAAAAAGCTTGGCTCTCGAGAACGCGCTTCGCACAGAAAAAGCTGCAACGCGCACAGTTTTGCTGGTGTTGATGGTGTTTCTTGCGTTATGGATTCCGTTTTTGACCATCGATTTTATAATTGTTCAATGTGAAAGCTGCAGAAACGAAACATTTCACCTCGCTCGGGACATAACTCTCTCGCTGGTGTACTTCAGCAGCGGGATTAATCCCGTGATTTACGCCTGGCGCGTTCAAGTTTTTCGGAGGGCCTTTATGCGGGTTTTGGGCGTCCAAGGGGGGCGTTCTTTTAATAGAAGCCGTGCATTGTGGAAAAGGACTATCAATAGTGGGATTTCGCTACCAAATCTCACGCTGAACAGTTCCAAGCGGGCAAGCTGGAATGTGATAGATCCTGGTTTTAAGCTAGACTTGGAAGCTATTGATCGCAACATGGCGCACGTAAATGAATCAATGGAACTTAGTTCAGCAGAGTTGGTTGTTTCAAATACACCTGCTTCTGTAACAAACTAA

Transcript

FUN_006009-T1

Protein

Uniprot

Uniprot term	Description
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
P34968	5-hydroxytryptamine receptor 2C OS=Mus musculus OX=10090 GN=Htr2c PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan