Gene detail

Detailed information of FUN_006109-T1 in Siderastrea siderea

Genomic Location: contig_4:15264946...15284419
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006109-T1

ATGGCTAAGACAAGGAAAGGATCAGGACCGGAGAAAACTGCCAAGAAGTCTAATAGCAGCATGAATCCAGACCGCCCAAAACCAGCAGCAGGATCCAACATGCGAGACAAGACAACAATCAACAGACTGAAGATGTACAAATCAGGCGGAAAGGCTGTGAGaaataagcAGGGAAAAATTGTGAAGCCAGCTCCATTCCAGAAATCGGTTGTGTCAGGAGAAGTGGCCAGAGTTGCCCCAAACAGAAAGTGGTTTGGGAACACAAGAGTGATAAGCCAAAATGCTTTACAGTCATTTCAAGAAGAAATGGGCAAGGTGCTTAATGACCCATATAAGgttgtgatgagacaaagtaaACTGCCACTGTCTCTTCTTAATGAAAGAGCGCAGTCAGCAAGGGTCCATATTCTGGATACAGAAGGTTATGAAACAACATTTGGACCCAAAGCACAAAGGAAAAGACCCAACCTCAAGGCAGCGGATGTTCAGAGTTTTATGGAAGCAGCCCAATTGTCTTCAGAAATGTATGATGAAGAGATGGACATGAACCTTGTAAGAGAGGATGATGGTGAAAAAGTGGAAGCTAAAGAGTCCTTGTTTTCTAAAGGGCAATCAAAGCGAATCTGGAATGAGCTGTACAAGGTCATAGATTCCTCAGATGTTGTCATACAGGTGTTAGATGCGCGTGACCCCATGGGAACACGTTCCAGCCATATTGAATCTTTTATGAAGAAAGACAAACAACACAAGCATCTTatttttgtccttaacaagTGTGACCTCGTGCCAACATGGGTAACGCAAAGATGGGTTACAGTTCTGTCTGCAGAGTACCCTACTCTCGCCTTTCATGCAAGTGTGACAAATCCGTTTGGTAAAGGAGCTCTTATTAACCTTCTCAGACAATTTGCTAAGCTTCATTCCGATAAGAAGCAGATAAGCGTCGGTGTCATCGGTTACCCTAACGTCGGCAAAAGTTCAATAATCAACACGCTCAAGGCTAAAAAGGTCTGCAACGTGGCACCCATCGCCGGAGAAACGAAGGTGTGGCAGTACGTAACACTGATGAGACGAATTTACTTGATCGATTGTCCTGGAGTCGTGTACCCGAGCGGTGACTCGGAGACTGATATCATACTTAAGGGTGTGGTTCGTGTGGAGAATGTGAAAGATGCTGCGTGTCATATTCCTGCTGTACTGGATCGAGTGAAGCGGGAGTACATAGCAAAGACCTACAGGATATCATCGTGGACTGACTCGACTGACTTCTTAGAACAAGTCGCTCAAAGGACTGGTAAATTACTCAAGGGTGGCGAACCAGACGTAAACACGGTGGGCAAAATGATCTTGAATGATTTTCAACGAGGAAAGCTGCCATATTTTGTGGCCCCACCAAGCAAGGAAGGCGAATCAAATTCCGAAGAAatacagaaagaaagaaaaacatcccGTATTCCACCGCTTTCAGATAGTTTTGTTAAAGAAACAAACGCCAAATCACATGAAGAACAATGTTCTACTACTGAAACGGTGAATATAAAAGACAGCCAACCGGGCGCAAAGGAAAGTAACTTTTGGAAAGATTCAGCTCGTGAAACAAATAAAGTAGAAAGCACAAACCACGGAAAGAGCGCTGACAAGAATTCTCACAACAACCAGCTTACAGAAAATGGCGATGATCTGAGTGGGACGATTAGTGAGAATAGAGAACTTTCTGGTCAGAAAACAAAGCATGTAACTCCGCATGTAAAACAGAACTTCAGTGAAATAAACGTGGAACTAGAATATACTGGAGACGATATCAAGCCATTACAGGAGAATAGCGAAGAAGACGAAGACAACACTTCTGTTGAAAGTGAATCCGAGGATGAATCAGAAAATGACGAAGAAGAGGAAGACCAGGACGGAGATGTGAAGAATGAAGAGCAGGAGGATATAAGGGCGGCTTATGGGAAACCCGAGACCGAAGACCAGGAAATTGGGAGCGAAGAAGATGCGAcagatgaagaagaagagaaagaggaacaAGATAACAAGGAAAGTGAGGATGAGGACGATAACGAAGATGACGGTCAAGATAATGAACTCTCGGATAAAGAAGAAGAACTGGAAAATGACAAGAATGCAGAGGGTTCGGTGACTGCGCTAAACAAAGAAGCTGATAAGAAGAAGCGAAAGTTACTCAAAAAATACACAAGGTCACCAGGTTCTCACACATTACCTTCTCGCCAAGCCCAAGAATGGACCACGCCCAGCGAAAAACGCTTCTCAATTTCAGTCAGTCCTTACATCGCATGCGTGGAAGCTGTGGGAAGCGATGATGAAGAGAATAACAGACATCATATAAAGACAGCTGCAAACCACACGCCACGAGCGCGTCCAGACAGAATGAAGGGTAAAAAGAGAGAAGCGACAAACATGACACGTGCAAAAGAAGATACTGGAAGTTCTGGTAGAAGACGCAGTAAAAGGAAAAGCGATGGTGAGGACGATTCACCAAATTCAAAGCAACCTCGTTTAAAGACGAATAAACAGAAAATTGGTATTCATTATTACGGGACAGTGAACGTCAAAAACAAGAAtcgaaacaaaaaaacaaaacttgagGAAGGACAGACTGGAAGGaagggaagaaaaagaaaataa

Transcript

FUN_006109-T1

GTTTCCAGTTTGCACGTGGCCAATATGGTGGAACAAGCGTGCGTGAATTTGTAGAAGAACGCAATAGCTTTAATTAGGTATTTTGCTCAATTGTAGCACCCGAAATTGTCCGCTGAAATATTCGAACTGTCTCTCTGAACAACATGGCTAAGACAAGGAAAGGATCAGGACCGGAGAAAACTGCCAAGAAGTCTAATAGCAGCATGAATCCAGACCGCCCAAAACCAGCAGCAGGATCCAACATGCGAGACAAGACAACAATCAACAGACTGAAGATGTACAAATCAGGCGGAAAGGCTGTGAGaaataagcAGGGAAAAATTGTGAAGCCAGCTCCATTCCAGAAATCGGTTGTGTCAGGAGAAGTGGCCAGAGTTGCCCCAAACAGAAAGTGGTTTGGGAACACAAGAGTGATAAGCCAAAATGCTTTACAGTCATTTCAAGAAGAAATGGGCAAGGTGCTTAATGACCCATATAAGgttgtgatgagacaaagtaaACTGCCACTGTCTCTTCTTAATGAAAGAGCGCAGTCAGCAAGGGTCCATATTCTGGATACAGAAGGTTATGAAACAACATTTGGACCCAAAGCACAAAGGAAAAGACCCAACCTCAAGGCAGCGGATGTTCAGAGTTTTATGGAAGCAGCCCAATTGTCTTCAGAAATGTATGATGAAGAGATGGACATGAACCTTGTAAGAGAGGATGATGGTGAAAAAGTGGAAGCTAAAGAGTCCTTGTTTTCTAAAGGGCAATCAAAGCGAATCTGGAATGAGCTGTACAAGGTCATAGATTCCTCAGATGTTGTCATACAGGTGTTAGATGCGCGTGACCCCATGGGAACACGTTCCAGCCATATTGAATCTTTTATGAAGAAAGACAAACAACACAAGCATCTTatttttgtccttaacaagTGTGACCTCGTGCCAACATGGGTAACGCAAAGATGGGTTACAGTTCTGTCTGCAGAGTACCCTACTCTCGCCTTTCATGCAAGTGTGACAAATCCGTTTGGTAAAGGAGCTCTTATTAACCTTCTCAGACAATTTGCTAAGCTTCATTCCGATAAGAAGCAGATAAGCGTCGGTGTCATCGGTTACCCTAACGTCGGCAAAAGTTCAATAATCAACACGCTCAAGGCTAAAAAGGTCTGCAACGTGGCACCCATCGCCGGAGAAACGAAGGTGTGGCAGTACGTAACACTGATGAGACGAATTTACTTGATCGATTGTCCTGGAGTCGTGTACCCGAGCGGTGACTCGGAGACTGATATCATACTTAAGGGTGTGGTTCGTGTGGAGAATGTGAAAGATGCTGCGTGTCATATTCCTGCTGTACTGGATCGAGTGAAGCGGGAGTACATAGCAAAGACCTACAGGATATCATCGTGGACTGACTCGACTGACTTCTTAGAACAAGTCGCTCAAAGGACTGGTAAATTACTCAAGGGTGGCGAACCAGACGTAAACACGGTGGGCAAAATGATCTTGAATGATTTTCAACGAGGAAAGCTGCCATATTTTGTGGCCCCACCAAGCAAGGAAGGCGAATCAAATTCCGAAGAAatacagaaagaaagaaaaacatcccGTATTCCACCGCTTTCAGATAGTTTTGTTAAAGAAACAAACGCCAAATCACATGAAGAACAATGTTCTACTACTGAAACGGTGAATATAAAAGACAGCCAACCGGGCGCAAAGGAAAGTAACTTTTGGAAAGATTCAGCTCGTGAAACAAATAAAGTAGAAAGCACAAACCACGGAAAGAGCGCTGACAAGAATTCTCACAACAACCAGCTTACAGAAAATGGCGATGATCTGAGTGGGACGATTAGTGAGAATAGAGAACTTTCTGGTCAGAAAACAAAGCATGTAACTCCGCATGTAAAACAGAACTTCAGTGAAATAAACGTGGAACTAGAATATACTGGAGACGATATCAAGCCATTACAGGAGAATAGCGAAGAAGACGAAGACAACACTTCTGTTGAAAGTGAATCCGAGGATGAATCAGAAAATGACGAAGAAGAGGAAGACCAGGACGGAGATGTGAAGAATGAAGAGCAGGAGGATATAAGGGCGGCTTATGGGAAACCCGAGACCGAAGACCAGGAAATTGGGAGCGAAGAAGATGCGAcagatgaagaagaagagaaagaggaacaAGATAACAAGGAAAGTGAGGATGAGGACGATAACGAAGATGACGGTCAAGATAATGAACTCTCGGATAAAGAAGAAGAACTGGAAAATGACAAGAATGCAGAGGGTTCGGTGACTGCGCTAAACAAAGAAGCTGATAAGAAGAAGCGAAAGTTACTCAAAAAATACACAAGGTCACCAGGTTCTCACACATTACCTTCTCGCCAAGCCCAAGAATGGACCACGCCCAGCGAAAAACGCTTCTCAATTTCAGTCAGTCCTTACATCGCATGCGTGGAAGCTGTGGGAAGCGATGATGAAGAGAATAACAGACATCATATAAAGACAGCTGCAAACCACACGCCACGAGCGCGTCCAGACAGAATGAAGGGTAAAAAGAGAGAAGCGACAAACATGACACGTGCAAAAGAAGATACTGGAAGTTCTGGTAGAAGACGCAGTAAAAGGAAAAGCGATGGTGAGGACGATTCACCAAATTCAAAGCAACCTCGTTTAAAGACGAATAAACAGAAAATTGGTATTCATTATTACGGGACAGTGAACGTCAAAAACAAGAAtcgaaacaaaaaaacaaaacttgagGAAGGACAGACTGGAAGGaagggaagaaaaagaaaataaatgaacCAAATTTAGAATTTAGATGAATTTAGAAATGTGAAGAACATAAACAATATGAGTGTCTATCGCCATAAAACTTGTTTCTTTCCTGAGAACTCCAATAAAGAATTTTGTACGTCAAAAAACTGCGCTTGTCTTGATTTTGATTACAAATTTACAAATCAGTAAATGTAATAGATAAGGAATCAAAAACCCTCCTCAGAGGAACAACTTTCTTTTTCCCTCTCGTTTGAAATGAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08153 all species →	NGP1NT	NGP1NT (NUC091) domain	Domain	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024929 all species →	Domain	Nucleolar GTP-binding protein 2, circularly permuted GTPase motif	Interproscan
IPR050755 all species →	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan
IPR030378 all species →	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR012971 all species →	Domain	Nucleolar GTP-binding protein 2, N-terminal domain	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089 all species →	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14537	NUG2, GNL2; nuclear GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_006109-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

70TPM > 0

7Conditions

507.2Max TPM

117.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	17	125.56	350.21
holobiont · low.pH Control.temp	20	14	135.07	507.19
holobiont · control.pH_high.temp	20	16	92.19	253.01
holobiont · control.pH Control.temp	19	17	146.72	498.78
Whole organism	4	4	20.46	26.09
unannotated	1	1	18.70	18.70
live coral tissue/skeleton	1	1	21.08	21.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	350.21
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	326.59
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	320.42
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	290.83
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	163.79
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	149.31
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	134.30
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	113.77
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	111.54
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	88.20
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	80.00
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	79.68
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	77.48
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	71.24
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	65.05
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	63.95
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	24.76
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	507.19
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	374.78
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	352.33
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	210.32
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	188.67
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	178.19
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	171.41
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	159.37
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	116.31
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	106.45
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	90.99
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	84.90
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	81.76
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	78.72
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	253.01
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	251.59
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	232.50
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	193.35
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	140.14
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	137.37
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	128.64
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	103.93
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	84.14
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	74.81
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	73.03
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	46.79
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	40.83
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	32.49
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	26.42
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	24.82
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	498.78
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	365.29
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	291.52
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	234.91
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	185.19
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	179.61
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	158.01
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	153.40
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	149.25
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	118.07
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	92.69
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	89.61
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	69.75
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	64.94
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	60.93
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	41.27
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	34.51
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	26.09
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	22.13
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	17.14
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	16.47
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	18.70
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	21.08

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.