Detailed information of FUN_006200-T1 in Siderastrea siderea

Genomic Location: contig_4:16330081...16346704
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13193
all species →		AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan
PF16177
all species →		ACAS_NAcetyl-coenzyme A synthetase N-terminusFamilyInterproscan
PF00501
all species →		AMP-bindingAMP-binding enzymeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042099
all species →		Homologous_superfamilyANL, N-terminal domainInterproscan
IPR025110
all species →		DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR045851
all species →		Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan
IPR032387
all species →		DomainAcetyl-coenzyme A synthetase, N-terminal domainInterproscan
IPR000873
all species →		DomainAMP-dependent synthetase/ligase domainInterproscan
IPR011904
all species →		FamilyAcetate-CoA ligaseInterproscan
IPR020845
all species →		Conserved_siteAMP-binding, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24095
all species →		ACETYL-COENZYME A SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003987
all species →		Molecular Functionacetate-CoA ligase activityInterproscan
GO:0006085
all species →		Biological Processacetyl-CoA biosynthetic processInterproscan
GO:0016208
all species →		Molecular FunctionAMP bindingInterproscan
GO:0019427
all species →		Biological Processacetyl-CoA biosynthetic process from acetateInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01895ACSS1_2, acs; acetyl-CoA synthetaseEC:6.2.1.1
Lipid biosynthesis proteinsko01004deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_006200-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
49TPM > 0
7Conditions
219.0Max TPM
50.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 12 45.52 171.58
holobiont · low.pH Control.temp 20 7 40.30 218.97
holobiont · control.pH_high.temp 20 12 55.42 155.93
holobiont · control.pH Control.temp 19 12 61.79 204.84
Whole organism 4 4 40.75 50.23
unannotated 1 1 69.89 69.89
live coral tissue/skeleton 1 1 54.55 54.55

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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