Gene detail

Detailed information of FUN_006302-T1 in Acropora pulchra

Genomic Location: ptg000001l:10649954...10672567
NR annotation: XP_044176911.1, TPR and ankyrin repeat-containing protein 1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006302-T1

ATGGATCCTTTTGAATTGGCACGCCAAGGACTTGTCGCAGTAGAAGCTGGCCTCTTAGAGGATGCTGCATTGCTGTTTACTACGGGATTGCAGGTTACACCAACTGGCCAAACAAGATTTGCCAGTAAGTTACTGAAGGACAGAGCAGATTGCCACTGGGGTTTAGGACGTACCAAGGAAGCTTGTGCCGATGTGAAGAAAGCTTTGGAGTTGTCTCCAGGCATGAAGGATAAACCAGAGAAATGGCTGTCAAGAGGCTTCGATGCTCTGGAACAGGAAAACTTTCCAATTTCTGTTCAGTGTCTTTCCTTTGCCTTGGTTTATTGCCCTGCCAAGAATGCCACAATACGGTCCACTGCATATGCCTGGAGGGCAGAGGCAAAATACAGAATGGGAAAGGTTGCAGAGGCACAAGCAGACATTGCAAGTTCTAGAAAGGCAGATCCTTCCCTTGCCAAGCAACAAGGGTGGAGGAATAAAGAACAAGGAATTCAGCTTTACCAAGCCAAGAGTCTCAGAAAAGCCATTGTGTCATTTGGACTTGCAAAAGAGTTCACTTCTGTTTCAATGCCTGAGACTCATGCACAGATACAAAGCTACCTGGCATCATGTCATTTTGATTTGGGAAAATACAAACAGGCATTAGAAGCTGGAAAAGAGGCTTACAAAATCAGGCCAGGGAGATCTCAGGATGAAGCAAAGCGGTGGAAAGAAAGAGGCAAACAGCTGTTTAAAGAAAACAGATTTAATCTCCTTGTTGATTGCTATTCTTTGGCTATTTGTTATGCACCCACAAGTGACAGAGAGCTACTTGCTCAGTTGCTTTGTAATCGCTCATTGGCCCACATAAAAAACAATGCCTTTACATTGGCATTGCTGGATGCTGAGCGATGTGTCAAGATACAGCCAAAGTGGTCAAAGGCGCACTATCGCCTGGGATCAAGCTTGACAGGCATGCAACGTCACGACGACGCCATGGTCTCCTTTGCATCAGCACTTGAACTTGCCGACTCTGATGAGGAGAAATATGACACACTGTTGCAAATCCTTGTCATTGGATCTGAATTGGAAGAGGGAACTATGATCATCGGTGGAGAATTGTGTCCTCGACATATAATACAAAGAGCTGTGGATGAAACTGTTGCAAAAGAAAACTGGGATAGACTAGCTTTACTCTTTCTTGGTGGCGGCGGCCCACATTGTGCCTGTTACCGAGAGGGTGGGCTGGCAAGCGACTGCGATGCTTCTAAAGTTCCCCTTGAATGTGTAATATCATCTCAAGTTAAGGACAAGCTTAACCTCGTTTCCTCCCTGGTGGATTTCGGGGCGTGTGTCGATGGACTTGTATCTTGTCACCAGCCGCCCTTGTTGGTAGCTTTGGAGAAAAAAGAATTTGAGATTGTTAGTGAATTGATTCAAAAAGGTGCTAAAATGGATTGCATATCAGATCAGCCATATCTTCAAACAAGGGCCCATGCATTGTACTGGAAAAGACAAGCAGACAAATCATTTAGATGTGCAAACTACGATGAAGCCAGCAAATACTACAACTTGGGTGTAAAACACAGCCCAGAGCAATCAGCCGACCTCAAAGGAGCCTGTTATGAAGCATTAGCCGATGTCTGCTTTAAGCAAGGGAAGTTTCTGCAGTGCGTAGAATGTGGAGAAAAGGCAAACTCAGTGAAAGTCACCAAGAACGAGGACTTGGTACAGAAATGGAGAGGACGTGGAAACCAACTCTTCAAGGACAAACAGTATGAGTTAGTTGTGAAGTATTATTCGCTGGCAATATGCTATGTGCCACAGACAGGCAATGAAAATGGTAGGCTGCGTGCCATGTTGCTTAGCAACAGATGCGCTGCCTACTTAAACTTAGAGATGTACGACAGAGCCCTCGATGATGCCAGGAAGTGTGTTGAGAGTGAACCAGAGTGGTCCAAGGGATATTATCGTCTTGGATCTTGCTTTAATTTCCTGAGACGGAAATCGGAGGCGTTGATGTATTTCTGTGAAGGGCTGAAAAATGCAACAACGGACGATGATAAGTTTGCTCTTACAACTCAAATTATCAATGTAGCAATGGAAGTGAAGGAGGGAACACTCGCAATAACATGCCGGATTCCGAGACCCGCTGCACAAAAACTGATCAGAGAAATATGTGTTAAGAAGGAATGGGACAAACTTCATATGCTATTCCTTGGAGGCGACAGTCAGAGGTCGTTCCAGAAGGGTCGCGGTGGTGTAGCAACAGGATGCGATGCCGTGATTGTTCCGCTCGATCAATTACTCACATCATCAGTTCAAGATCGTGACAAGTTGATTGCTGTGTTACTTGACCATGGAGCCCTGCCAAATGGACCCCTGGGTTGTAAGACGCCACCCCTGTCCGTTGCTATGGAGATGGAAGATTATGCCATTGCTTGCATGCTTCTGAAGCATGGGGCTGACGCATCTGCTATAGGCTGTCACAGGGGAACAGGGCAGCATCAACGCGAGCAGGTTCAAGGTCAGTACTGGAAAGAAGAGGGTGTGAAGGCGTGGAACGTAAAAGACTACAAGCGAGCAATCAAGCTGTTGAATCTCTCTCTCCAATTTCCGAATTCCCATGATTTGAGCTATCTTGTGAACAATTATTTGGCGGGTGCGTATTTTGAAACAAAGCAGTACAGCAAGGCAGTGGAGAAGGGACGAGAGTGTTTCAAATTAAAACCAACAAAGTCGCAGGTTGAAGCCAACAAATGGAAAGAACGTGGCAAGAGACTCTTTTCGGAGAAAAAGTACGCCATTCTGGTGGAATACTACACTTTGGCAATGCAATATGTACCAAGCAATGACAAAGAATTTGTGGCGATACTTCTGAGCAATCGATCCCTAGCTTATTTCACCATGGGAAATTTCCAACAGGGCCTTGAAGATGCCAAGAGCTGTACACGGTTTAGACCAGATTGGCATAAGGGCTTTGTACGACAAGGAGATTGTCATGCGAGCTTGGGCGAGAACAGGGAAGCTGCCAAAGCGTTTGGTGAAGCACTTAAAAGAGCAGAAAGTGATGAAGAGAAGGCCACCATATTGTCACAGATTCTTGCGTTGAGCGTCAGTCTTGAAGATGGAACCTCGAGCATTACCTGTAGTGTCCCAAACAACATTATGGAGAAACTTATTAAACAGCTGACTGAGAAGCGAGCCTGGGAAAAGATCCACGTTCTGTACTTAGGGGGTGGAGGTCCACAGCGATACTCTCTGGGAGAGGGTGGTCTAGCCACTGGAATCAGCGCCGCAGAAGTTCCTCTAGAGCTTGTGTTCGAAGCTGATGAGAAGTATCGAGTGGCTCTGATCCTGGCGCTGTTGAAGAATGGAGCATCTGCGAATGGCCTGAAGAACAAAAAAGAGTTTCCACTGCAGCTGGCTTTGAAAGCGAGAGATTACAAACTTGTTGTGACACTGTTGCAGCACGGTGCCGATGCAGCATGCCTTCTAGGAAAGCCTGGAGACTCTCTGCTGCATGAAGCTCTTAAACAAATGTTAACCACAGGCAACAACACCTATTTTCGGCATCTTCTGAACTCCGGCTTGTTTGATCCCGATGTAGTCGATGGAAGTGGCAATGGTCTCTTACATTTGGTGTCGTTCGGCAAATGCTCCAAGAGAAAATGCGAAGTGATTTATAGCCTGTTAGGGGCCGGAGCCAATCCTACACTCAAGAACACAGAGGGAAAAATGCCTGTAGACTATCTCGTCAAGAAAGATCCTCGTACGCGACTGATTAGGACAGCTATGAACTCATTCAAGGCTGCCAAGAAATCCGGAGGTGCAAAGAAAATAAAAAAGGTGGTGGAAGCGCCTGAAAAGAATGTTGTACCGCAAGACAACGCTGGTCAAGAAGATGATGAACCAGATTGGTGTCAAATGGCTGAAGACGAAGTTGAAAATGATGAGCCAAAAAGGCAGGGTGTCAAAGCTAGAGGCAAAAAGCCCATTCCTTCAACCCCACCAGTTATAAAGGACCCTCTGGATGTGGTTCGAGTAAGCGTAAGTGACTTGATTGATAGTTTATGCCCGGAAAATGTACTCCAAAATGAAGATGGAACCGGTGAAGACTCTGATAGCCAGTCAAAGAATGAAACCGTTTGTGAAGCGACGAAGGACACCGGCCAGGAGCAGGAAACTGTCGTCCATCATATTGTTCCGGATATCGAGAGAATTGAAGTCGATGTGGAAGATAATGACTCAAACGACGAAGATATGGAGCTGGATCTAGAATGTCCATTTGAAGATCTTCCTTGGGAAGTCGACTGCACGGACCAGTTTTGGAAAGCGCTGCAAAATAATAAAGCAAGTGATGTTTTGAAGCGACGAATTGTGACCAGGATTCGCATGTTAGCCGAAGGTCGTTGGACTAAAAAACTCTGTAGAAGGCTCGATGGCCAATCTAAAAAAACTCAATATCATGTTGTTTGA

Transcript

FUN_006302-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15050	TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4
Q96AY4	Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
Q8BV79	TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000903 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10579 all species →	Rapsyn_N	Rapsyn N-terminal myristoylation and linker region	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019568 all species →	Domain	Rapsyn, myristoylation/linker region, N-terminal	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22904 all species →	TPR REPEAT CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0033130 all species →	Molecular Function	acetylcholine receptor binding	Interproscan
GO:0043495 all species →	Molecular Function	protein-membrane adaptor activity	Interproscan
GO:0051879 all species →	Molecular Function	Hsp90 protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_006302-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.