Gene detail

Detailed information of FUN_006416-T1 in Acropora pulchra

Genomic Location: ptg000001l:12221596...12238129
NR annotation: XP_015763492.1, PREDICTED: sodium-coupled monocarboxylate transporter 1-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_006416-T1

GCGCTGAAATTTCAGCATGAATTTCACCATGTAATCAGGCCCTTAGCACATTCTTAAAAGTATGTGGAGATGTCGTCATTTTGGAAGCCATCTTTGATGTTGGATACAACAATCAGCTTACACAACGATGATATTTTCTTACGTTACAACGCTGGCAAATTTTTAAATTTGACAACATGGCGGTCCACGCACATTTTTCTGCAGTGGATTTTGTTGTATTTTCTTTAATTTTGCTCGCTTCCATGGGTATTGGAATTTTCTTTTCTAGATCTGGTGGAGCACAACAAAGCAATAACGAGTATCTAATGGCTGGTAGGAGCATGTCCAGTATCCCTGTTGCGATGTCCGTGCTTGCGTCTTTTGTATCTTCCATTGCGATTCTCGGGACACCTACTGAAGTTTACACATTTGGATTTCAATATTGGATGCAATCTTTCACGAGCTTCATCTCTGTTCCTATCATGGCTTGGGTGTTTCTACCCGTGTTCTACAATCTTCGCTTGACGAGCAGTTATGAGTATTTGGAAAGACGCTTTTCGTTTAGTGTGAGGATGTTTGGCTCCACAGTTTTTGTAATTCAAACGGTGCTCTACACAGCTATTGTGTTGTATGGTCCATCTCTTACATTAGAGTCAGTCACAGGATTTCCACTTTGGTTGTCTGCAATAGTCACTGGGCTTGTTTGTACTTTTTACACCACTCTGGGTGGAATGAAAGCTGTAATTTGGACAGATGTTTTTCAGGGCATTGTCATGTTGTTAGGAATGATAACAATAATCGTCATTGGCACTGCCAAGGTTGGCGGTTTAGGCAAAGTGTTTGAAATTGCTCATCGTGGTCACCGACTAGATGTAAATCTTTCCATAGATCCAATGCAGCGAACCACCCTTTGGGCCATTCTGATCGGTGGTATTTTTCAAATGCTCCCTGTTTATGCAACCAACCAGACTGCTGTGCAAAGATTCTTAACAACAAGATCTCTCCAAGAAGCAAAGAGGTCTGTATGGATGAATCTTCCCCTGACCATTCTCAATACATCAGTGACAGCTTTGGCAGGATTGGTTCTTTATGCCTTCTATGTTTCTTGTGACCCAATCAGTGCTGGTGAGATTCATGCTGGCGATGAGATCCTTCCATACTTTGTGATAGAGGTGCTTGGAAAATTTCATGGCATCCCTGGAGTCTTCGTGGCTACTCTGTTCTGTGGCACTTTGAGCACTGTAGCTTCAGGTCTCAATGCACTGGCCGCAGTGACAGTGGAGGATTTTCTTCCTTTATTGATAACACGCATCCCACCTGAGAGGGAAGCACTGATATCTAAGATGCTAGTGTTTGTTTATGGACTTGTGTCTCTTGCACTGGCTTTCTCTGTATCAAAGCTTGGAAACATGATATTACAGATGAGTGCAGCAATGTTTGGAACTACAGGTGGCCCAATGTTAGCTCTGTTTTCTCTGGGTATCTTAACAAAGCGTGCTAGTACAAAGGCTGTATGGATTGGGGTTGTGATTGGCTTTTCATTAGCGGCATGGATCAGTATCGGTGCACTCGTAAACCCGCCAAACTATCCTACATTGCCAATGTCGATATCTGGTTGTGCCAGTAACCTAACAAATAGCATTACGACATCAATTCATCCTTCAACAAGCCATGAACATCATTTGGTATACTCTATTTCATTCTTCTGGTATGGAGCTTTTAGCTTCATTATCACATATGTCTCAGGATACTTGGCTAGTTTTATTTTTGCCAAGGATTCAAGCGAGACAATAAACCCTAGTTTGTTGTTTGACTACTCCAAGGTGGCAGCCTTGTGGAGAAGATCCCTTCCTGACATCGACATGCTTTGCCACAGTCAAGTGAAATCCACAGAGGAAAGCAGGCCATTTATTTCAAATGAAAATGACTGTGATCAAGAAAAGAAAAACTATATCCATGAGAAAGCAAGATGATTGCTACTATTTTTTGAAAAGTCTATCACATCTGAGTAGAGTGCCCCTAACCCATAATTTTTTTTGTTCCTGATTATTTTGGAGAAAAAGTATTATAGTCATACATTATTTCCTCTGCTTTAGTTCACCACCAAGTTTACAGGAGATTGGGTCCAAATCTGGTCTGTACATCAGCTGGGGAAGTGATTTTTGCACAGAGACATTGAGAAACCAAAGAAAGGAAGAAAAGGTTGTCTAGAATATGCCCAAAAGGTGTGTTGCTGATTTAAATGATTTCCGGGCAGGAAGGTCAAATTAGAGAGATTTTAAGGCCAGAAAGTTCAGATGAATTCCAGTTCATCGCATCAGCATCTCAAAAGTGAAGCAATTGGCTTCCCCTGCTGACGTCACAAATACATTTGGTTTCAGACCTCCTTTCGCAGACTTCCGAAGATTTGATCGATTTTCTTAATTCTCTTTTCAATCCTCACCAAATTCTTCATTCTTTTTGAAAATTAATAGCAAAAAATTGAGGTTAGGGGCACTTTAAAAACAGTTATTACTTTTGGTTCTTGCAATTGCCTACAGATATTAATATTCATACATTGTATGGTATGCTTTTTGAATATGCTTTCCTACTAAAAATGAATGACTATACACCAGTGCCACAATTAGTGGCATTTTTAAAGTATCAACTTCTTGATTTTACTAATCCAGACTACATCCACATAATCAGGGGTTGCAGTAATACTACCTGTTTTAATGGCCTAATTAAGTCTTTTCCCATCTGAAGCTCACAAAAAGTGGTGCATTAAGTCCAGGGGAGAGGGAGAGTTTTTCAGATATCATTGCCTGTATCCATGTACCAAGTCATTTGAAGCATCATAAATCTAACACTGCTCAAACAATGAAAGTTCAGATAGAAAGAAACACTACACCTGCATATTATACAGTCATATGGCAAAGTTTTCCTGTTTTATTTTTCCTATGCTTAATAACATAAAAAGAGCCATGTTAATGAAGGCCAAGTTTATACTCCATTGTAAGATGGGGATCACATGTTACTTCTGAATCTCCAGCCACTGAAACAGAAAGCACACAAAAAGTGAACATTGCAATACAAGTCTAACTTACATTTAAATGGAAATTCCTAAATGGACTTCAGATCTCATTTGCACCTTACCTTTTCTTTCTGGACCTGTATCAAACTTTTTATTTACAATAACTGCAGAACCCTCGTGCACTCATTGGCTAATTTTTATTGTCAATAAGCGGACAGACACATGAAATTTATAATTTATGCGGTATTGACGTAACAAGCAAGAGCAGAAAATTTGAAAAGTCGATCTGTCACTTTTTAACCAATAGAAAGCATCCGTTTTTTCTATTAGCCAATAAGAGAGCGAGGAGAATTATGAATTTTGTCGCGTCAGATTGAATAAACTTTGAAGTTTCTCGCGCATTTTTGTCGCATTTTGACTTAATTTTGTCCCCTCTATCTTTCTGTTATTGTAAAAAGCAAATGGACGTCAGTTTTTCATGCGTCTGTCCTGTTATTGACAATGAATTTCGTCATAACATTGTCAAAGTAGTCTGCGGATCCACAGCTACTTTGACAATGTTATGATGAAATTCATGATCAATAACAGGACAGACGCATGAAAAACTGACATTAATTTGTTAAATTTAGAATAGAGACTTTGGCCAATAAAGTTGAAATAACAAAACAAAACAAGATTGAAATGGTTTTGTTGGAATATAAGTAATATTGAAGAAAAATAACTGTGGGTAACAATAATTATATATTATATTATATTACTACATAATTTATTATGTGTGGATATAAATGTACATATATTATGTGTGATAAAGCCATGAATAAAAATGATACCCATGAAGTGAAATGATATGATATCACATCACTTCACGGGTTTGAATTGTCCAATCAAATAGATTGTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N695	Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A8 PE=1 SV=2
O70247	Sodium-dependent multivitamin transporter OS=Rattus norvegicus OX=10116 GN=Slc5a6 PE=1 SV=1
Q5U4D8	Sodium-dependent multivitamin transporter OS=Mus musculus OX=10090 GN=Slc5a6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051163 all species →	Family	Sodium:Solute Symporter (SSF)	Interproscan
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR018212 all species →	Conserved_site	Sodium/solute symporter, conserved site	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42985 all species →	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14388	SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.