Detailed information of FUN_006418-T1 in Siderastrea siderea

Genomic Location: contig_4:18999793...19012507
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21123
all species →		Dna2_RiftDna2 Rift barrel domainDomainInterproscan
PF08696
all species →		Dna2DNA replication factor Dna2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048459
all species →		DomainDNA2, rift barrel domainInterproscan
IPR011604
all species →		Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR014808
all species →		DomainDNA replication factor Dna2, N-terminalInterproscan
IPR051827
all species →		FamilyCRISPR-associated exonuclease Cas4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36531
all species →		CRISPR-ASSOCIATED EXONUCLEASE CAS4Interproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_006418-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_006418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_006418-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
129.9Max TPM
4.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 7.48 121.92
holobiont · low.pH Control.temp 20 1 2.97 59.41
holobiont · control.pH_high.temp 20 3 8.64 129.91
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 0.63 0.96
unannotated 1 1 0.51 0.51
live coral tissue/skeleton 1 1 0.97 0.97

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP