Gene detail

Detailed information of FUN_006427-T1 in Acropora pulchra

Genomic Location: ptg000001l:12352919...12361970
NR annotation: XP_029201009.1, ubiquitin-like protein 3 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_006427-T1

TCTTGTCATCTGATTGAAAAGGTTATCGTCGAAAGAAGACATGTAAAAATCAGAATATTATTGCAACGGGATAGGATCTTTTGCTATCGAGAAAATTCGAATATATACTTCTGTAAAGTTTTCTTCAAGTTAAAGAGCTCTTTAGTTAGCGATTCAACTTAAATTGTCTTGGCCTGCTTTCTCCCAGTATGGGTGAAAACAATGCAAGACACAAAACAGTACCAGATGACAAGATATGTCTACGTCTTATTTTAGTTTCTGGCAAGACACATGAATTCATATTTTCACCAAATGACACTGTTTATTATATAACACAACATGTCTATGAACATTGGCCTGAAGATTGGAAAGATGAAGCAGTTAGCTCCCACAACATTTTAAAACTTATCTACCATGGTCGGTTTCTACATGGGAATGTCTCATTATCTGCCCTTAATCTGGAGACAGGAAAGAGAAGTGTAATGCATCTTGTTTCGAGAGAGAATTTACCAGAGCCAGCCACACAAGGTCAAAGGAATCGTGAGAAAATAAATCAACAAAGTTGCTGCTGTTGTATTGTTTGACTAAACGCTGATCACGTGCTCTTTGCAAAGAGCACATTTCTATTGTTGACCTTAGCCTGTTTTATTGAAATGGTAATAATTATTCTGGGTTAATAGCCTCCCATTACTTGTAAATTTATACCAACACTTCCTCCTTGTGAAAAGGACGTAAAGGAAGGTTGTCTTTCCAGTGCACACAGGCGGAGACAACAAAAGAGAACTCCTCTACTTACAGTATTCCTGGCAAAACCACATAACAAGGTTTCAACTTGCCCATGCACGAAAAGTTAGTGATGAGATGGCAAGTTAGTATTTCATAGCAATAGTTAATGATTGTTTGGAATTGAGAATTTTTTCAAAATCTAATTGGCTTTACAAATCGAAAGAAAAAGGACATTCAAATTTCTTACGGTAGTAGCATGTCTTGACAGTGACTGCCAGTGGCAAATAATGTTATTGTTACTAATTTTGTTTGTCAGTAGCACAGTAAGGTTACCCACTGGAAAATTCAACCAATAATGAATACAACATGAATATCACAAAAGAAGTTGAAATTATATTTTAATTTTTGAAATTCACGTTGTCTCCTCCATGAGTCTTTTTGGAAAGGCGGGCCACTCAACCCTCTTAACATGCAGTGCATTAAAATTAAAGTTAAGGAGAAAGTACATCTATCACTTTATATTTATAATAATGAATAATGTTGTTATTCGCTGCAAGTGTTTCCCAAAAACAAAAAAAGGGATCTGTTGGGGTTTTTTTGTGATTTAACTAAGCAAATGGAGAATGTAATTAATTGAAATTTAAAGGGTAACTTCTGGAAGCATACCACATCAAGGGCCACAGGGCCTCTTTGTTATGTTACCTTTAAATGAAACTGAAAGACAACGCTCTGAGCTGGTGGTCGTGCGGGTCAGTGTTACTGGCCCCGAATATGTCCCAAACATTGAATGCTAAATTTATTTTTAAAATGACAGGGTTTTTTTTCTTTTTCTATCTTCTTCCTCTGCATTTAAAGTTTATTGTTCATAAGTGAAGTATTCTCAGCCAAAGACTATGCGCAATTTAAAGACGTATAATTGCTTCTAAGATGTGTTGGACTTTCACCTTCTCATACTACTTTTTCATGTGCCAATTAGAGCCAATGAATAACCAATTAATTTAAAGGTGTATATTTTTGTGAAAGCTACAACTTAGTAATAATTAAGAAATATTTCTTATTCTTCTCTGGGGTCTAGAAGTGCACCAAATGCGATACACATTAAACTTTGATGAGTTCCTCATGGACTTGCATTACATTTTGTGCATTTCTGGGAATATCAACATGTGGGTTTCCTCATGCTTAAAGATAGAAGACTGAATTTTTTCACATTGACCAGTTAAAATAAAAAGCAATAAGTGTTGTAGGTTTCATGTGTCAACATCCAGTTTTACTTTAGTCATAAAAAAGCTAATTTTCATGATCACTTTCCTTTTCACTGTTTTATTTTAGCTAAACGGTAGAGAGATGATTTATGTTGATGTGGTAGAGTTTGTTTTCTTATGGTAGAAGAAATATTATTTTGTATAGGTAATCACATGATTTCAAGTGCGATTTGGAATAAATAAGCACAAGTAAATTTTTCAAAGACTAACAAAATTCAAGGGCAATTTGGAGTCTTTGAAAAATTTACGAGTGCTTATTTATTCCAAATTGCTCAAGAAAAATAATGTGATTACTTATTAATAATATACAAGAAAAAATTTCCAGATGGTTTATAACAGAAGAAACTCATGCGTACCACGCAATCAGGGGAAAATTGCACCATCCAGGGCGTGTGCTTGATTTGAAAGCAAAAGATTTGATTGGCCATCTGTGAGTTTCTTTGATCATTGACCAATCGGAATGCTTGGCCTGTTTCCTCTTTTTGCACTGAATTAATTCTTTTCTGCACTGTTTAAAAAAAAGAAACTGCACTGCTCTTAAGCAATCAGAATGGAGAAATTTTTTCATGTATATTATTAGTTCAAGAAAAGTTAGTCCCCACTGGAGGCAGATAAATGTTGACAGATTTCAATAGTGCTTCTCTTGTTTTCCAAATTAGTACTGTCAACAATAGAAGTAGCATTTAATTTTTTTAACCTGTCAATAGTGTTGTTTTAGCCTATCGTACCAATATTACTTAGTATAAACAAACAAATAAAACCAATGTTAAGCATATTGTTTCGTACAAAAAAAGTACTGAATTTTCCTCTCAAGAACCTTAAGTCTTCGCACAGTCCAATTGCAAAGGAGATTTACCTCTTTCTTGTAAGAATTTTTAGCCTTGGTGCTAAGTTCAAAAAGGAGTAAAAGATCCCTCCATGCTGCCTTACTTCTTTGGACATTGGCAGTTGTCTTTTCGTAAAAGCGATAAATTAAGTTTGTGATAAAGTACCCATGCTATCATTTTCACCCCAGCATTTTGAGCGTGCAGCTTTAGTGTCCGTAAGATACATAAGTCATTATCCTTAGTTTTAGCCCATGTAAATAGGTTCCTATGATTATAAATAAACCATCTTTGAGTGCATTCAAATGTTTGACTCTCTATTTCACTTGGAAAAAAAGTTTAATATATCTCCTTTTTGGTATAAATTATTTGTTTGGTATAGTACTTTCTTAAGGTCTTGAGGTTTTAGGGCTGATGTGGAAGAAAAACTCTTTGTAAAAGTGTGGGCAATTTTTAAAGTAGTGACCTTTGAGCCTGTAAAAACTATGCAAGTCTGCAAGATTTGTGAGGCCAAAATAAATAATATTATAATGTATGCATCATCAAGAGTTCCTACAATCAAAGCTTTTTGTAAGTGCATGACTGCCTTGTGAATTTGAAAAAGTGGTCCCTACTAGACGTGGTTGCTTGGAAGAATGAGCTCTACTAAATGACCAAAATCTTAAGCAATGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TA46	Ubiquitin-like protein 3 OS=Bos taurus OX=9913 GN=UBL3 PE=3 SV=1
O95164	Ubiquitin-like protein 3 OS=Homo sapiens OX=9606 GN=UBL3 PE=1 SV=1
Q9Z2M6	Ubiquitin-like protein 3 OS=Mus musculus OX=10090 GN=Ubl3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009206 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13881 all species →	Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR040015 all species →	Family	UBL3-like	Interproscan
IPR047977 all species →	Domain	UBL3-like, ubiquitin-like domain, metazoan	Interproscan
IPR039540 all species →	Domain	UBL3-like, ubiquitin domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13169 all species →	UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_006427-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.