Gene detail

Detailed information of FUN_006435-T1 in Acropora pulchra

Genomic Location: ptg000001l:12399386...12405743
NR annotation: XP_029200992.2, ankyrin repeat domain-containing protein 50-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006435-T1

ATGGCACGAAATGGTGTCGATTCGAGGCCGTTTTACTGTCGGGAATGGGTGTTTGAGAAAATCAACACTTGTCTTCAAAGACGACAACAACAAGAAGACACCAAAACGAAAGGTGCTTTTGTGTTAGGTAGCCCTGGCTCCGGCAAAACCACAATCTTACGTGAGATAGTTTCCCCAAAGGCGAGTGACGGCGTTCAAGTTGAACTTGCGAAGAAGGTCGTGGTTTCACATTTTTGCAAAGCTGAAAACGCCTTATCTGTTTCAGTCGCTGATTTTATATCAAGCTTTGCTAAGCAACTTGCTCAGGCAGAACAACTGAAAGCCTTCGCGTCGAAACTTAACAGCGCCGAAATTCAAAATCATCTAAAACTCGAACAGTGCATTCGAAATCCAGATCTTTCATTTAAAGAAGGCATTGTTCTTCCTCTGAATTCCTTGACACCGCCTCAAGATGTGTTTTTAGTTGTGGTAGATGCCATAGATGAGTCCTTTTTGCATTCTTTCGATTCCGGCGTTGCATCTGGAAGCAAAACTGTCGCTGAACTTATGGCCTCACACCACGATCTATTTCCACCTTGGTTATTTCTTGTTGTCAGTGCCAGAAAACAGTCTAAAACAGTGACAAGAATGTTCACAGGATTTCGTAAGTTTACCCTGGACGATCTTCGAAAAGCCCATGTGGTCAAAGACATACAACATTATATTTTACATCGTCTAGATGATGAACCCTCGTTAAGGAAACATTTGACAAGGGAAACAGCAGAGGTTTTTAACCAACTTCACATCAAAAGTAATGGTTGTGTTCTGTATTTGGAAAAATTGCTTGACGGGGTGGTAGATGAGTTTTTCACCTTGGATGAGACCCAAGACATTCCTGGAACTCTGTCTGGTCTCTATTTGTGGCTTTGTAATAGATTATTTTCAGAGGTACAAGTTGAAAAGATTCGCTCAGTCTTGAATGTTATTTTGGCTGCACAGAGGCCTCTGACAGACTCTGAATTGTATGAAACAGTTTGGACGAGAGACAGTGAATTATCCACGGAAGAATTTCAGGAAACCATCAATCTCATGTCACACCTCATTCTTACAGATGAAAATGGTGCTAAAAGTATTTCTCACTTATCTTTTGCTGAGTGGTTGCTTGACGTGAAACACTGCACTCCAAAGTTTCTATGCAGTCCTGGAGATGGACATGCAATGTTAGCATTGCATTACACGCAACTTTCCCAAAGGCAACTACTCCCAAATCCTCATGAGCTTGCATTTCATTTAAGCCGTGCATCATTCAGGGAATGTTTTACGCAAGATCACCTTGCATTGTGGCTTCTGTGGAGTGGATCACAAATTGCTGACATGCAACTTAACACTGATGCCTTAAATCAAGATGTTGCGCAGTTACTGATAAATGCCGGAGCAAAAGTTAATGAACTGGAGGAGCAAGGGTTAGATCTGCCATTTGCATCAGAGACAACAGAATCTATTCGTGCTTTGTTAGAGAAGGGAACATCAGTGGATCGTGTTGATAGTTCTGGGCGCACCCTGTTGTGCAATGCTGCATTCAATGGCAATGTTGATGTTGTGCGTCTTCTTATCAAGCACGGTGCAAATGTGAATTTCTCTGACACATCTGGTCAGTCCCCACTAATGCTAGCATCCAGACAAGGCCACAGTGAAATTGTGTATCTTCTGGTGAACTGTGGAGCAAAGGTAGATCATTGCGCCGATGATGGATGCACTGTATTACGAGCGGCAGCATCAGGTGGCTATTCAGATGTTGTTGCTATTTTGCTGAACCATTCAGCACAAGTAGATTTGGCTGATGATGATCAACGGACGGCGCTCCGTGGAGCAGCTTGGGGTGGACATGCTGACATTGTCCTGCAGCTCCTTCAACGTGGAGCTGACCCTAATCTTGCTGACAAAGAGGGGAGAACAGCCCTTATTGCTGCAGCGTACATGGGGCATCAGAAGGTTGTCCGAATCCTTCTTGAACACAAGGCTGAAATCAATCATGCTGACAATGATGGTAGGGCAGCTTTAGCTGTGACTGTGCTTTGTGCGTCATCAAGTGACAGCCATGAAGCTGTGGTTGATATCCTGTTAAACCATGGTGCTGAAGTGGACCGTCCTGACTTTGATGGCATAACTCCTCTCTGCGTTGCTGCATTGGAAGGTTATTACAATGTTGCAAAGTTATTAATTAGGGCAGGAGCTGACATTGGGCACTGGGATCGCAATGGGAGGACGCCTCTCTTTGCAGCTGCGGCAAGTGGTCATGGTGACATTGTACATTTGCTGTTGACAAGTGCTGAAGACAGTAATCCAGCTCCTTCTGGCTGGGCTTCACCCAAGTTTTCCATGTTTCGCCCTGATCTCAATGGATGGAACCCACTGATGGTGGCTGCTAATCAAGGTTACAAAGATGTTGTTGTATTGCTCCTTGAGGCAAATCTTGATGTCAATGCACTTGATCCTGATGGAAGATCAGCTCTGATGTTGGCTGCACACGAGGGCCATGTTGATGTCATAACAGCTCTTATTGAACACAGTGCTCCCATTGAGCAGGCGTCAGCAGATGGGCGCACTGCTGTGCATTTTGCTGCAATGGAAGGACATGAAGCGTGTGTGCAACACTTGCTTAGTCTTGGCGGCGATGTTAATCATCAAGACAGCTTTGGACGCACACCACTGTTTACTGTTGCCATTGAAGAAAATAAGTCAATGGTGGAGCATCTTTTAGACCTTGGAGCATTTGTTGACTGCCAGGATGTTGAAGGAAGAACTCCTTTGCATGCAGTTACATGGAAAGGCAGTTATGAGCTTGTAGAGCTGTTCCTAGACAGAGGTGCATGCGTGAATCATGCAGACTGTGAAGGCCGCACAGCCTTAATGTCAGCAGCATGGAGAGGTCATGTTCCAATTGTGCAGTTATTGATACAGAGAGGTGCTAAGGTAGACAAAACTTCAAATGAAGGTGCCACATCTCTTTGCATCGCCTCACAGGAGGGGCATGACGAAGTTGTACAGCTCTTGTTGGAAAATGAAGCTAACATGAACCACACTGACAAGCTCGGACGGACACCAATGCAAGTTGCCTATGAGGCGGGTCATACAAGGGTAACCAAAGTACTAGAGGCATTCAGTGTTATGAGGCTCAATGAGGGAAACTTCACAAGCACATTGAAAAGAAAGCTGTCTTCAACTCGGTCAGAAAGCGGTAGTACTATTTCTAACAGCAGCCAAACAGAAAAGTTGCATAGGTCTGACAGCGTCACATCATCCAACAGTTCTGACTCTGCGGCAGCTTCAAGGAAGGAGCTAGATGTCCCAAGAACGCCACACCTTGGACCTAATGGAGAGTTGTTAGAGGAGAGACGTTACTCAGCCAGTTTTCATAATTTGCATACGGTCCCCCCTCTCAAGGAGCCATGGAATTCTTCCTGCCCTCCCTACACATCAGAATTGGATGTTCACGAACCTCCACCGTACTCAGAGAAACCTGAAAGAAGTTCTTTTGTTGAAGACGATGTGGTTACCAGCAAGCCTTCCCCTAAAATTAAACACAAGCAATTTTCTTTACTCCATAAAATGAGGCAGAAGGGGAAAAGTGCATTCTCCTCAAACAGTTCTTCTGGTCAAGATAAACACGGAAAACATGTGGGCAAGGCTAGGGCTCAGGCTGAAAAACGTGGAATTATTTCTGGTATAAAAAAGCTGGGGATTAGTAGTCACCCGCATGGTGCAAGTTCAGCAAAAGCACAAGTTGAAAAAAACAGTGATTCAAAGGGATCAAAGGAATCATTAGAAACAACAATATAG

Transcript

FUN_006435-T1

AATTGGGAAGCTCCATGAGCGAAAACTGTATGGTCCCTTTTTAAGCAACTTCTCTGGATATATAAATTTGGAAGCGAAGTTTTAATTGGTCCACAAAGAACAAGGTTTTGTTACCTTGAGCCAATTTAGCGACTGGAAATAATCGTAATATGTTGAAAACATCCCTCGAGCGATGGGGCAGAACAGAAATGACAACACATGTCAAGTCTTCATAATGCAGCTTTGTTCCCAAGGGACGCACAGGAAAAGCAAACCGTTGATCCGCGTGCAAAGAATTTTGACCTGGTTTGAGTATGTTTAAATGGTCTACATTCTTTTACACTCCTTATTGTTTTAAAGGAAGATCAGCCGATAATTATGGCACGAAATGGTGTCGATTCGAGGCCGTTTTACTGTCGGGAATGGGTGTTTGAGAAAATCAACACTTGTCTTCAAAGACGACAACAACAAGAAGACACCAAAACGAAAGGTGCTTTTGTGTTAGGTAGCCCTGGCTCCGGCAAAACCACAATCTTACGTGAGATAGTTTCCCCAAAGGCGAGTGACGGCGTTCAAGTTGAACTTGCGAAGAAGGTCGTGGTTTCACATTTTTGCAAAGCTGAAAACGCCTTATCTGTTTCAGTCGCTGATTTTATATCAAGCTTTGCTAAGCAACTTGCTCAGGCAGAACAACTGAAAGCCTTCGCGTCGAAACTTAACAGCGCCGAAATTCAAAATCATCTAAAACTCGAACAGTGCATTCGAAATCCAGATCTTTCATTTAAAGAAGGCATTGTTCTTCCTCTGAATTCCTTGACACCGCCTCAAGATGTGTTTTTAGTTGTGGTAGATGCCATAGATGAGTCCTTTTTGCATTCTTTCGATTCCGGCGTTGCATCTGGAAGCAAAACTGTCGCTGAACTTATGGCCTCACACCACGATCTATTTCCACCTTGGTTATTTCTTGTTGTCAGTGCCAGAAAACAGTCTAAAACAGTGACAAGAATGTTCACAGGATTTCGTAAGTTTACCCTGGACGATCTTCGAAAAGCCCATGTGGTCAAAGACATACAACATTATATTTTACATCGTCTAGATGATGAACCCTCGTTAAGGAAACATTTGACAAGGGAAACAGCAGAGGTTTTTAACCAACTTCACATCAAAAGTAATGGTTGTGTTCTGTATTTGGAAAAATTGCTTGACGGGGTGGTAGATGAGTTTTTCACCTTGGATGAGACCCAAGACATTCCTGGAACTCTGTCTGGTCTCTATTTGTGGCTTTGTAATAGATTATTTTCAGAGGTACAAGTTGAAAAGATTCGCTCAGTCTTGAATGTTATTTTGGCTGCACAGAGGCCTCTGACAGACTCTGAATTGTATGAAACAGTTTGGACGAGAGACAGTGAATTATCCACGGAAGAATTTCAGGAAACCATCAATCTCATGTCACACCTCATTCTTACAGATGAAAATGGTGCTAAAAGTATTTCTCACTTATCTTTTGCTGAGTGGTTGCTTGACGTGAAACACTGCACTCCAAAGTTTCTATGCAGTCCTGGAGATGGACATGCAATGTTAGCATTGCATTACACGCAACTTTCCCAAAGGCAACTACTCCCAAATCCTCATGAGCTTGCATTTCATTTAAGCCGTGCATCATTCAGGGAATGTTTTACGCAAGATCACCTTGCATTGTGGCTTCTGTGGAGTGGATCACAAATTGCTGACATGCAACTTAACACTGATGCCTTAAATCAAGATGTTGCGCAGTTACTGATAAATGCCGGAGCAAAAGTTAATGAACTGGAGGAGCAAGGGTTAGATCTGCCATTTGCATCAGAGACAACAGAATCTATTCGTGCTTTGTTAGAGAAGGGAACATCAGTGGATCGTGTTGATAGTTCTGGGCGCACCCTGTTGTGCAATGCTGCATTCAATGGCAATGTTGATGTTGTGCGTCTTCTTATCAAGCACGGTGCAAATGTGAATTTCTCTGACACATCTGGTCAGTCCCCACTAATGCTAGCATCCAGACAAGGCCACAGTGAAATTGTGTATCTTCTGGTGAACTGTGGAGCAAAGGTAGATCATTGCGCCGATGATGGATGCACTGTATTACGAGCGGCAGCATCAGGTGGCTATTCAGATGTTGTTGCTATTTTGCTGAACCATTCAGCACAAGTAGATTTGGCTGATGATGATCAACGGACGGCGCTCCGTGGAGCAGCTTGGGGTGGACATGCTGACATTGTCCTGCAGCTCCTTCAACGTGGAGCTGACCCTAATCTTGCTGACAAAGAGGGGAGAACAGCCCTTATTGCTGCAGCGTACATGGGGCATCAGAAGGTTGTCCGAATCCTTCTTGAACACAAGGCTGAAATCAATCATGCTGACAATGATGGTAGGGCAGCTTTAGCTGTGACTGTGCTTTGTGCGTCATCAAGTGACAGCCATGAAGCTGTGGTTGATATCCTGTTAAACCATGGTGCTGAAGTGGACCGTCCTGACTTTGATGGCATAACTCCTCTCTGCGTTGCTGCATTGGAAGGTTATTACAATGTTGCAAAGTTATTAATTAGGGCAGGAGCTGACATTGGGCACTGGGATCGCAATGGGAGGACGCCTCTCTTTGCAGCTGCGGCAAGTGGTCATGGTGACATTGTACATTTGCTGTTGACAAGTGCTGAAGACAGTAATCCAGCTCCTTCTGGCTGGGCTTCACCCAAGTTTTCCATGTTTCGCCCTGATCTCAATGGATGGAACCCACTGATGGTGGCTGCTAATCAAGGTTACAAAGATGTTGTTGTATTGCTCCTTGAGGCAAATCTTGATGTCAATGCACTTGATCCTGATGGAAGATCAGCTCTGATGTTGGCTGCACACGAGGGCCATGTTGATGTCATAACAGCTCTTATTGAACACAGTGCTCCCATTGAGCAGGCGTCAGCAGATGGGCGCACTGCTGTGCATTTTGCTGCAATGGAAGGACATGAAGCGTGTGTGCAACACTTGCTTAGTCTTGGCGGCGATGTTAATCATCAAGACAGCTTTGGACGCACACCACTGTTTACTGTTGCCATTGAAGAAAATAAGTCAATGGTGGAGCATCTTTTAGACCTTGGAGCATTTGTTGACTGCCAGGATGTTGAAGGAAGAACTCCTTTGCATGCAGTTACATGGAAAGGCAGTTATGAGCTTGTAGAGCTGTTCCTAGACAGAGGTGCATGCGTGAATCATGCAGACTGTGAAGGCCGCACAGCCTTAATGTCAGCAGCATGGAGAGGTCATGTTCCAATTGTGCAGTTATTGATACAGAGAGGTGCTAAGGTAGACAAAACTTCAAATGAAGGTGCCACATCTCTTTGCATCGCCTCACAGGAGGGGCATGACGAAGTTGTACAGCTCTTGTTGGAAAATGAAGCTAACATGAACCACACTGACAAGCTCGGACGGACACCAATGCAAGTTGCCTATGAGGCGGGTCATACAAGGGTAACCAAAGTACTAGAGGCATTCAGTGTTATGAGGCTCAATGAGGGAAACTTCACAAGCACATTGAAAAGAAAGCTGTCTTCAACTCGGTCAGAAAGCGGTAGTACTATTTCTAACAGCAGCCAAACAGAAAAGTTGCATAGGTCTGACAGCGTCACATCATCCAACAGTTCTGACTCTGCGGCAGCTTCAAGGAAGGAGCTAGATGTCCCAAGAACGCCACACCTTGGACCTAATGGAGAGTTGTTAGAGGAGAGACGTTACTCAGCCAGTTTTCATAATTTGCATACGGTCCCCCCTCTCAAGGAGCCATGGAATTCTTCCTGCCCTCCCTACACATCAGAATTGGATGTTCACGAACCTCCACCGTACTCAGAGAAACCTGAAAGAAGTTCTTTTGTTGAAGACGATGTGGTTACCAGCAAGCCTTCCCCTAAAATTAAACACAAGCAATTTTCTTTACTCCATAAAATGAGGCAGAAGGGGAAAAGTGCATTCTCCTCAAACAGTTCTTCTGGTCAAGATAAACACGGAAAACATGTGGGCAAGGCTAGGGCTCAGGCTGAAAAACGTGGAATTATTTCTGGTATAAAAAAGCTGGGGATTAGTAGTCACCCGCATGGTGCAAGTTCAGCAAAAGCACAAGTTGAAAAAAACAGTGATTCAAAGGGATCAAAGGAATCATTAGAAACAACAATATAGCGTCAAAAGACTAAGAAATTAGTGATATTGACTTTGGATGTGTGTCGTCTTTTATAAATAGGTGTTGATAAGTCAGTGTTGCATCAAAGTTTAAATAATGATAACTCATTTCAGGGTTGCTTTCCAACCTCTTTACAAAGCAAAACCTGTTCAAGGGTGTAGTTTATTTAATAAACAACACCCCTAAATATGGGTTTTATGGTAATGAAAATAGGTATTTCATATGGCTTTTAATCATTCAAAGATGTTATCATGTCAAGAGCTTGCAATCTGGTTTTAGTTATGTCCAGAAATTTTCAAAATGAAGTTCAAAATGAGGTGGAAGCCAAGTTTGATACTGTAAGTTTTGTGGTGTCCCTGTTTCCTCTTCCTTTTCTTCAACATGGCATTTTCCCTTGATACAGGTAATAACAGGTGATAAACCCAACAAAGCATTCCTCAAACTCCTCTTTTCTAGTAAACAGGTGGTTCATTTATTTGCTATTTTTTTGGGACAATGGATTAAAAAATTAGGTTATTTGGAGTATGCGAAGACCCACAATAAATTATCAATTTTGCTCTTAGATTCTGTGCCATGCAAGCCTTTTAAATTAAGTTACTACACAATGTATTTCTCACACCACTTTAATTAAATATCAAGTAATAATAATAATAATAATAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ7	Ankyrin repeat domain-containing protein 50 OS=Homo sapiens OX=9606 GN=ANKRD50 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050889 all species →	Family	Dendritic Spine Regulation and Scaffold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24166 all species →	ROLLING PEBBLES, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21440	ANKRD50; ankyrin repeat domain-containing protein 50	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.