Gene detail

Detailed information of FUN_006568-T1 in Acropora pulchra

Genomic Location: ptg000001l:14192942...14222392
NR annotation: XP_044176422.1, rho GTPase-activating protein 26-like isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006568-T1

ATGGGGCTTAAGCCTCTAGAATTCGAGGATTGCATTTTGGATAGCCCTTATTTTCGCGAGAATATTCACGAACATGAGCGAGAGCTCGAAAGGACGAATGAGGCTATCAAAGGTCTTATCAAAGAATGCAGAACGGTTCTGAAAGCCATTGAAAGCTTGTCTAAAGCTCAGAGGAGTTTTGCTCAAGTGCTAAGTGATTTCAGATTTGAATGTATTGGCGAGGTAGAAACAGATGATGAAGTCCTTATAGCTGACGCATTGAAAGAATTTAGCAAAATGATTGACTGTGTGGAGGATGACCGCGACATCATGTTAAATCATGCACATGCTCAATTGATTTTACCTCTGGAGAACTTTAGAAAGGAGCAGATAGGCAGAGCAAAGGAAGAAAAAAAGAAATTTGATAAACAAACGGATAAATATTGCATAGCAGTACAAAACTACCTAAACTTGTCTTCAAAGAAGAAAGATACAATCCTGCAAGAGGCACAGACTCAGTTACAAGGAGAAAAAGAGGCTTTTTATCAAACAGCGTTTGATTATGTGGTTAAGTTGCAAGAAGTCAATGAAAAAAAGAAATTTGAATTTGTTGAAACACTTTTATCTTTCATGTATGGTCACATGACCTTTTTTCACAGTGGTCATGAAGTGTTTTCTGATAACATGGAATACATGACTGAACTTCAACTGAGACTTCAAAATACAAGAGAAAGATTTGACACCACACAAGAGGAAGCAGGAAGCCTGATGAGTCGAGTTCAGCAGAAAGCACAAAGTGGAGAGCTTCAATACAGTGGTGCACATACAAGGCAAGGATATCTCGGTGTACAAAGGAAAGGAGGCCTTGGAACCACATGGACCAAACATTACTGCAAGTATAATAAAGAAAACAAAATTCTTACAATGATCCCTTACACCCAGACACAAGGAAGAATGAATGCTTCTACAGATACCATGGTGGTTAAATCCTGTGTCAGAAGAATGACCGACTCTATTGACAGAAGATTCACCTTTGAAATAACTGCCGAGGAAAGGACGCAACCAATTTTATTACAAGCACAAGATGAGGAAGACAGAAAGTCATGGCTGGAAGCCATGGATGGCAAGGAGCCTGTATACATGGACTCCAACAGCATTCCAAAGTTGAAAGACAAGGAAACTAAAGACCTTGAACTTACCTTCATTACAAAATGTATTTCAGCAGTAGAGAAAAGAGGCATCACTGACCAAGGCCTATACCGTATTGTTGGAGTAGGATCCAAGGTTCAAAACCTTCTTCAACAGTGTATTGAAAGGAAGAAAGTTTCAACAATCGACCTTGCAGATAACGATTGTGAATTTGAAGTCAAGACGATAACTAGTGCTCTCAAACAATATTTGAGAAACATGCCAGAACCTTTGTTTACCTATGATTACCATGAGCAATTCCTGGATGCAGTCAAAAAAGAGACCTTTGAAATGAGAGTAGATGCTTTGACATTTCTTGTGGCTAGTCTACCAGAAGATAACCGAAGTCTCATTAGGACTGTCATGAAGCATCTAACACGTGTTGCTGCTCATTCGAACAAGAATCTTATGGCTGCTAGTAATCTTGGTGTTGTGTTTGGTCCAACATTGATGAAGTCCAGAGAAGAATCTATGGCTGCCATCATGAATTTGAAGTACCAGAGTATTGTGATTGAGCTTCTTATCAATGAATTTGACAAAATATTTGGACCTGACACTCCTGATACTCTAGACAGTCCTGATGGCATACAGGACAAAGAGATCCCTACCGATTCTGCACCAGTCAACACAAATCCCTTTCTGGATGACGAATCAGATGACTCCTCCAGCTGGGTCGTTGTGAAGCCAAAACCTCTGCCCAAGAAAAGAAACAGTGACGACTCATCAGGAACCACACTGATTGAGAGCAAAACACCTCCCAAACCTCTCCTCCGTCCCAAAGCATATTGTGCCCCACCCCCACCCAGTAACAAACCGACTCCAGCTGCCCAGCCTCGCGTTAAAACTGTCCCTACGTCAGATTCAGAAGAGAATCTTAACAGTTTGTCAGATTCATCAAGCAAGACTTCAACTCCTCAGAGTGAAGGCAAGACTCCCCTATCACCAAGGGATTTCTGGAGGGAAAAAGATGGTAGTTTTATGTTTGTGTTGTTTTCCTTATCCAAGTCCCATGCTGTGGGGCACAGTGCAATGGGTACCACCTGA

Transcript

FUN_006568-T1

TGAAATCTATTCCTGCTTCCTAGGGATTGTTTACGAATTTTTCGATCAGCCCTAAGGATTCTTTGTCTCATTCATAGCATAGGAGGGCTGCTTATCTTCCGTGATGGGGCTTAAGCCTCTAGAATTCGAGGATTGCATTTTGGATAGCCCTTATTTTCGCGAGAATATTCACGAACATGAGCGAGAGCTCGAAAGGACGAATGAGGCTATCAAAGGTCTTATCAAAGAATGCAGAACGGTTCTGAAAGCCATTGAAAGCTTGTCTAAAGCTCAGAGGAGTTTTGCTCAAGTGCTAAGTGATTTCAGATTTGAATGTATTGGCGAGGTAGAAACAGATGATGAAGTCCTTATAGCTGACGCATTGAAAGAATTTAGCAAAATGATTGACTGTGTGGAGGATGACCGCGACATCATGTTAAATCATGCACATGCTCAATTGATTTTACCTCTGGAGAACTTTAGAAAGGAGCAGATAGGCAGAGCAAAGGAAGAAAAAAAGAAATTTGATAAACAAACGGATAAATATTGCATAGCAGTACAAAACTACCTAAACTTGTCTTCAAAGAAGAAAGATACAATCCTGCAAGAGGCACAGACTCAGTTACAAGGAGAAAAAGAGGCTTTTTATCAAACAGCGTTTGATTATGTGGTTAAGTTGCAAGAAGTCAATGAAAAAAAGAAATTTGAATTTGTTGAAACACTTTTATCTTTCATGTATGGTCACATGACCTTTTTTCACAGTGGTCATGAAGTGTTTTCTGATAACATGGAATACATGACTGAACTTCAACTGAGACTTCAAAATACAAGAGAAAGATTTGACACCACACAAGAGGAAGCAGGAAGCCTGATGAGTCGAGTTCAGCAGAAAGCACAAAGTGGAGAGCTTCAATACAGTGGTGCACATACAAGGCAAGGATATCTCGGTGTACAAAGGAAAGGAGGCCTTGGAACCACATGGACCAAACATTACTGCAAGTATAATAAAGAAAACAAAATTCTTACAATGATCCCTTACACCCAGACACAAGGAAGAATGAATGCTTCTACAGATACCATGGTGGTTAAATCCTGTGTCAGAAGAATGACCGACTCTATTGACAGAAGATTCACCTTTGAAATAACTGCCGAGGAAAGGACGCAACCAATTTTATTACAAGCACAAGATGAGGAAGACAGAAAGTCATGGCTGGAAGCCATGGATGGCAAGGAGCCTGTATACATGGACTCCAACAGCATTCCAAAGTTGAAAGACAAGGAAACTAAAGACCTTGAACTTACCTTCATTACAAAATGTATTTCAGCAGTAGAGAAAAGAGGCATCACTGACCAAGGCCTATACCGTATTGTTGGAGTAGGATCCAAGGTTCAAAACCTTCTTCAACAGTGTATTGAAAGGAAGAAAGTTTCAACAATCGACCTTGCAGATAACGATTGTGAATTTGAAGTCAAGACGATAACTAGTGCTCTCAAACAATATTTGAGAAACATGCCAGAACCTTTGTTTACCTATGATTACCATGAGCAATTCCTGGATGCAGTCAAAAAAGAGACCTTTGAAATGAGAGTAGATGCTTTGACATTTCTTGTGGCTAGTCTACCAGAAGATAACCGAAGTCTCATTAGGACTGTCATGAAGCATCTAACACGTGTTGCTGCTCATTCGAACAAGAATCTTATGGCTGCTAGTAATCTTGGTGTTGTGTTTGGTCCAACATTGATGAAGTCCAGAGAAGAATCTATGGCTGCCATCATGAATTTGAAGTACCAGAGTATTGTGATTGAGCTTCTTATCAATGAATTTGACAAAATATTTGGACCTGACACTCCTGATACTCTAGACAGTCCTGATGGCATACAGGACAAAGAGATCCCTACCGATTCTGCACCAGTCAACACAAATCCCTTTCTGGATGACGAATCAGATGACTCCTCCAGCTGGGTCGTTGTGAAGCCAAAACCTCTGCCCAAGAAAAGAAACAGTGACGACTCATCAGGAACCACACTGATTGAGAGCAAAACACCTCCCAAACCTCTCCTCCGTCCCAAAGCATATTGTGCCCCACCCCCACCCAGTAACAAACCGACTCCAGCTGCCCAGCCTCGCGTTAAAACTGTCCCTACGTCAGATTCAGAAGAGAATCTTAACAGTTTGTCAGATTCATCAAGCAAGACTTCAACTCCTCAGAGTGAAGGCAAGACTCCCCTATCACCAAGGGATTTCTGGAGGGAAAAAGATGGTAGTTTTATGTTTGTGTTGTTTTCCTTATCCAAGTCCCATGCTGTGGGGCACAGTGCAATGGGTACCACCTGAATTGAGAAATGATAGTTATCTGTGTGAAAGGAGAAGCAGTGAAGATATGTATATGGTATACAGTATTTTTGGTTACTGAAGAAATGACCATGAGCTGGAACGCATATCTGTTGATATTTTTCTTTTTTTTTGTTAATCAAGGTTTTGTGCTAGTTACCTTTCAGTAGTTACATCTGTGTATTAAATTGTTTTCGTGTTAAATGAGTCTGCTATGTAATTGTTTTTGGTTAGTTGTTTTTATGTATGTTATCATCATTATTGTTATTATTTTTTCTTAATTCTTAATAGTCACTTTAAATAGTTCTCCAATAAATTCTGTTGAAGGATTTTTGCCATGAATTCTGCTTTTAGGTGCAAAACCAACTCCACCTCCGAAGAGACCAGACGTGGTGTAAGTAATATACAAACATTTTATGCATATTTTGTTGTTGTCGTTGTTGTTGAAGTTAGCTTGCAATGTTTATTTTGTTCAGTCACTTGCCAGTGCTTTTATTTTACATCCAAATTCACTTGCTAGTCACCAGTAAAAATTTGATAAGACATGTGGTTGAGTCCAAACTTTCTGTCACAACCTCTGAGATCTCTTTCACATTCATTTTCACTTGTTGACACTACCTGTATGCTATTAAAAAGATGCAATGATATTAATTGTGACTTCTGTAATATAGAATGTTCACTGGTAGGCTTGGTATTGCTTTAGCGCTGTTTTCATACGTAGTGTTTGTGTTGTTGGCTTTAAGCCTTTGTTTTGCCTGTTTGCTCATTTGTTTTAGCGCTGAGTTTAGAAACCGACAAGTAGCCAACTGTTCAAGACCCATTTCTATGATTGATGATTCCATGTAAGTCTCAACAGTTCTGGAGATGTCTCAATTGGCAATTTTTTGAACATCCCTCTGGCTTAACATGCAGAGATGTCATTCATAAGGATGATTTCAACGCCTTGCCGTTGTGCTCCTTGTTTGGTTGTCATGGCCAAGTGACCAAGCTTTGTATGAAAGTGAGGCCGACATGGTTTTGACACCAACCTCATTGTATGCAAGGGCACCATACTTCAAATTTGTGTTGCTGCAACAAACATGAAATTTGCACAAAATGCAATGCAACTCATCTGTTTTGAACAATTTTTTTCTATTTGCTCAGCTTGATATGGGTCTGGTTTAATGTATATATGTGAGCATTTTATTGCATCTTTAACGCAGCATCTTTTTTGTTTCTTTGCAATATGTTTCAGGAATGACAAGGGCAGGAATGACAAGGGCTCTGCCCATGCAATACGCCGTGTCAGCAGTCAGGGTGGGAGCCTAAACAGGGGGATACAGTCATGGGGAACACGACCACCCCCACTCCCAAGAGAACCTCCCCCACAGGAGGAACCCACACCATCACCACAGACAAAAACACCTAAGAAAGTGAAGACCATTTATCCCTGTGTGGCGGAGAATAGTTCTGAACTTTCATTTGATGCTGGTACTGTTATTTGCAATGTGCGACCTTCAAAAGAACCTGGATGGTTGGAGGGAACACTAAATGGGAGGACGGGCCTTATTCCAGAAAATTATGTTGAACCAATGACATAGCTGCACATCAAACCATTAGAGAATTAGGATATTTTAATTGTTTGTTTATAATGAAGTTTCTTTTTATTCGAAATTTGCTCAGCTATGATTCTTGCCAATAGTTTCACTCTGTTTCAACAAAGTTGTTACACATTTGAAGGAAAAATTTGTTCTTAACTTACTTTGATAGATTTACGCGAAAGGTTAAATTTACTTATTATATGGCCAATGTGACACGTTTCAGGATGATGCTCATAGCAGTCTTTTTGCCATTAATCATATCTTTTGTGTGGATTAAGCAATATTAATATTATTATTATTGTAAAATATTGCAATGACAGAGTGGCATTGGGAAAGTTCAGAAGAAGGCATACTGTTCATTTCTTTTTTTCACTCCCAGGTAACGAACAGTGCAAGAAATTTTTAAATGGTAAACACTTACATGCAGTTATGATTGAGTGTTTTTTAATATCGTTAAAGTAGATTCGCAACGTAGCCTTTTCGTATAGAAGGGCTTTTTTAAAGGTGTTTTACATTTTAAAACTGGGTTGCATGCACTTGTGGGGATAACATTCTGTTATCCAATAAGATGCCCATGCAAAATCTTTTGTTTGCGGAGTTGTAGTGTTAAAACTTAGTAATCAAGCTCTTTCTCATTGGCTTTTTTTAACAGGTGTTAACTCAAAAAATGGTTACACAAATTTGAGCCTTTAATTGTGAAAGTATTTATTTCTAGTTTGTTGGATAACTATCAAGTTAAAAAAAGGTCAGTTGTCGAATTAAGGTTCTAACGTGTCACCCAATCTTCAAAAGTGGCTCTCATTTTGAGCTGAGTGAATAGACCAAGCTACATTTGCACACAAAAAATGATGGGTTTTTGTTATCACATCTGATTCTGTTATGTCCAGAACACACTCCCCTCCATAGAATTTTTGCAATTGCTATTTGAAGGAATGAAGTTTAGTAACAATTGAATGATGTTTCCCCCTTGCCAATTTTTTCATTTTCACAGTTTCAATTTAAGGGCAAAAATTTTCTGGGTGTTACAGATCTATGAGGTACTCTTCTTATTGTATTGCAAATACATTATCTGATTGGCTTAGATAAGTGCAGTAACCATTCATGAGGGGAAGTGCTGTGTTGTACAGAAAAACTTGTGATAAATAGAATGCTTGTCCTCAAAATTAATGGTCAACATTTTCACAGAATATGCAAAATTCCATTTGGAATGCCCTGTAAAATGTGTCATTGACATAGAAAATCCCAGTTGAGAGTGCTTAACTGGTAGCATTCTCTACGTTGCTAGGTACAGTCTGCCAACTACTTGCAAACACAAATCAAGAAAAATGCCTGTATGGCTAAGCAGGGAGGCAGATTATCCTCATGGTCATATCTTTTTCAAGGTTGCAATTGTCTGGTCTTGGGTTTCTTTTTGGTCCTATTTAATCTGGGATGAGCACTGCTTTGAACAACCCAGTCCTAGTTTTCAGCTTTTTGTCGGGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DP6	Rho GTPase-activating protein 10 OS=Bos taurus OX=9913 GN=ARHGAP10 PE=2 SV=1
Q5ZMW5	Rho GTPase-activating protein 26 OS=Gallus gallus OX=9031 GN=ARHGAP26 PE=1 SV=2
Q6Y5D8	Rho GTPase-activating protein 10 OS=Mus musculus OX=10090 GN=Arhgap10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047234 all species →	Family	GRAF family	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR047225 all species →	Domain	GRAF, PH domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12552 all species →	OLIGOPHRENIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20071	ARHGAP26, GRAF; Rho GTPase-activating protein 26	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.