Gene detail

Detailed information of FUN_006583-T2 in Siderastrea siderea

Genomic Location: contig_5:1661496...1709407
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006583-T2

atgccacgCAGTACGTCGTTGTCAGCGGGTGCAATAAGTAAAGTTAAATTCAATATGGACGCCAACTTGGAAAAGCTTTTGCAAGAGGACGAAACCTTCAAGCAGTTTTTGGAGGAGGAATTTGACGACAGAACGTATGCAAATAACATTATCCAAGGTCGAGCTATTAGCCATGCACTTGCCAGGTTGGCAGATGGAATAAATTTATTGGACAAGGAACTTCACAGTCAgGTAGTGGAACATCATGAAGATCTGTTACAACAGGCAACAGGAATTGAAACATTGGAGGgtgTTCTTCAGATGATGCAGACCAGAATAAACTCACTCAAGGCTTCAGTCGAAAGAATACAGCAGCACATTGTTGAACCATATTTCAAGATTGTGTCAAGAACAGCCCAACTGCGTAGGCTTCAGGAAACGTGTGATATTTTGAGAAGAGTTATCAGAGTCATCTATCTCACCAAGCGTCTTCAAACTCAGCTGCAGGGAGGAGCAAGAGAAATCACCAAAGCGGCTCAGAGCCTCAGTGAACTTGATTATCTAGTTCAAGGAGCAGACCTCTCTGGAATCCAGGCTGTGGAAAATGATTTGAAAGTGGCTGCTAAGGCAAGAAGAGAAGTTGAGAACCAAGCACAGAGAATGTTGGCACAAGGCATGGAGACACAGAATCAAACTCAAGTGGCCACTGCACTGCAAGTTTTCTACAATCTGGGGTCTTTGGTCAGCACAGTGGATGAAGTTGTTACTAAAGTCAGGGATAATTTAAAAAGCAGTGTCCAGGAGGCATTGGATCCTAACACCCTGTCACAAGCTCAGCCAAACACAGGTGCTGGTGGTCCAGGGCGTGCTGCGATGCCTACTCCAGGAAACACAGCAGCTTGGCGAGCCACTCTGTGGACCAGAATGGAGCAGCTTATGGACTCTATTTACTCTGCTTGTGGCCAGGTGCATCATCTTCAAAAAGTCTTAGCAAAGAAGCGCGATCCTGTTACACATGTTTGCTTTATGGAGGAGTTAGTGAAGGAAGGAAACGCCTCTATTGCTTCTTTCTGGGACTCGGTGACGTATATTTTGACTGAGGAATTTGCACAGTCAGCCCAAGCGTCGACGTTCTTGAAGCAAGCGTTTGAAGGAGAGTACCCCAAGCTCCTGCGACTGTACAATGATCTTTGGTCCCGTCTACAGCAGTTTAGCGGTCCTTCAAACGCGCCCTCCGCCTCTATTGTGCCACAGTTAGAGCCTTCGTTCAGTCTATTTCCATGCACAGATGACGAGTTTAGCGTGAGCCCTGAACAGGCACTGAAGAACAGCCTTGCTCCCTTTGAAAATGCCTACCTGTCCAGGTCTCTGTCTAGATTGTTTGACCCCATAAATTTGGTGTTTCCATCTGGAGCGCGCAATCCGCCGTCAAAGGAAGAACTGGCAAGCATTGCAAAGACTATTGGGAGTGAGCTGAGTGTGGCCAGTGTAGATGTTGGTCTGACGATTACCGTGGCGAGGAATGTGGCCAAGACAGTCGAACTGTACACTGCTAAGTGTGAACAACTGCTCGTCACCAGTGCCGAAGCAAGTCAGTTGTACGATCACGTGACACCAGCACAACACAAGAACGCTTCCATCGTAAACAGCTTGTTTCAGTTACATCAGGCAGTTACCAAGATAGTGGATGGTCTCAGGTCTCCCCCGACGGTAGCTGTTGATGCAATATCTACAGGATTACAGGAAATTCTTGCTCTTATAAACTCTGCTCTAGATCCACTTCTTGATGCGATTAAGCAGGATTTGGAAAGCCATATTTTCAAGATGCATTCTGAGGACTTTACGAGTTCAACCCTGTCACGCGATATAGCTGATAACCCGGATGCTCCGTGCTCTGGTTACATACAAGAAATGCAGGATTTTATTATCCACATTCAGAAGAACTACATCTCACTTTATGAATGTAGAGAGCTCATGTTAGAGAGGTTAGAAGAAATCGTGTGTCGAGTTGTGgagttgtttgtttgtcacgCCAGTCTACTGAGACCTATTGGAGAAGGAGGCAAGCTGAAGCTGGCTGCTGACATGGCTCAAATTGAATTTGCCGTGGGACCTTTGTGTCACAAAGTATCTGATTTAGGAAAGTCTTACAAGCTCTTGAGATCTTTTAGGTAA

Transcript

FUN_006583-T2

GCAAAATAACAAGTCCAAAAAATTCGCGGACTACCCGAGGAATACcccgcgaaaatttcatgccacgCAGTACGTCGTTGTCAGCGGGTGCAATAAGTAAAGTTAAATTCAATATGGACGCCAACTTGGAAAAGCTTTTGCAAGAGGACGAAACCTTCAAGCAGTTTTTGGAGGAGGAATTTGACGACAGAACGTATGCAAATAACATTATCCAAGGTCGAGCTATTAGCCATGCACTTGCCAGGTTGGCAGATGGAATAAATTTATTGGACAAGGAACTTCACAGTCAgGTAGTGGAACATCATGAAGATCTGTTACAACAGGCAACAGGAATTGAAACATTGGAGGgtgTTCTTCAGATGATGCAGACCAGAATAAACTCACTCAAGGCTTCAGTCGAAAGAATACAGCAGCACATTGTTGAACCATATTTCAAGATTGTGTCAAGAACAGCCCAACTGCGTAGGCTTCAGGAAACGTGTGATATTTTGAGAAGAGTTATCAGAGTCATCTATCTCACCAAGCGTCTTCAAACTCAGCTGCAGGGAGGAGCAAGAGAAATCACCAAAGCGGCTCAGAGCCTCAGTGAACTTGATTATCTAGTTCAAGGAGCAGACCTCTCTGGAATCCAGGCTGTGGAAAATGATTTGAAAGTGGCTGCTAAGGCAAGAAGAGAAGTTGAGAACCAAGCACAGAGAATGTTGGCACAAGGCATGGAGACACAGAATCAAACTCAAGTGGCCACTGCACTGCAAGTTTTCTACAATCTGGGGTCTTTGGTCAGCACAGTGGATGAAGTTGTTACTAAAGTCAGGGATAATTTAAAAAGCAGTGTCCAGGAGGCATTGGATCCTAACACCCTGTCACAAGCTCAGCCAAACACAGGTGCTGGTGGTCCAGGGCGTGCTGCGATGCCTACTCCAGGAAACACAGCAGCTTGGCGAGCCACTCTGTGGACCAGAATGGAGCAGCTTATGGACTCTATTTACTCTGCTTGTGGCCAGGTGCATCATCTTCAAAAAGTCTTAGCAAAGAAGCGCGATCCTGTTACACATGTTTGCTTTATGGAGGAGTTAGTGAAGGAAGGAAACGCCTCTATTGCTTCTTTCTGGGACTCGGTGACGTATATTTTGACTGAGGAATTTGCACAGTCAGCCCAAGCGTCGACGTTCTTGAAGCAAGCGTTTGAAGGAGAGTACCCCAAGCTCCTGCGACTGTACAATGATCTTTGGTCCCGTCTACAGCAGTTTAGCGGTCCTTCAAACGCGCCCTCCGCCTCTATTGTGCCACAGTTAGAGCCTTCGTTCAGTCTATTTCCATGCACAGATGACGAGTTTAGCGTGAGCCCTGAACAGGCACTGAAGAACAGCCTTGCTCCCTTTGAAAATGCCTACCTGTCCAGGTCTCTGTCTAGATTGTTTGACCCCATAAATTTGGTGTTTCCATCTGGAGCGCGCAATCCGCCGTCAAAGGAAGAACTGGCAAGCATTGCAAAGACTATTGGGAGTGAGCTGAGTGTGGCCAGTGTAGATGTTGGTCTGACGATTACCGTGGCGAGGAATGTGGCCAAGACAGTCGAACTGTACACTGCTAAGTGTGAACAACTGCTCGTCACCAGTGCCGAAGCAAGTCAGTTGTACGATCACGTGACACCAGCACAACACAAGAACGCTTCCATCGTAAACAGCTTGTTTCAGTTACATCAGGCAGTTACCAAGATAGTGGATGGTCTCAGGTCTCCCCCGACGGTAGCTGTTGATGCAATATCTACAGGATTACAGGAAATTCTTGCTCTTATAAACTCTGCTCTAGATCCACTTCTTGATGCGATTAAGCAGGATTTGGAAAGCCATATTTTCAAGATGCATTCTGAGGACTTTACGAGTTCAACCCTGTCACGCGATATAGCTGATAACCCGGATGCTCCGTGCTCTGGTTACATACAAGAAATGCAGGATTTTATTATCCACATTCAGAAGAACTACATCTCACTTTATGAATGTAGAGAGCTCATGTTAGAGAGGTTAGAAGAAATCGTGTGTCGAGTTGTGgagttgtttgtttgtcacgCCAGTCTACTGAGACCTATTGGAGAAGGAGGCAAGCTGAAGCTGGCTGCTGACATGGCTCAAATTGAATTTGCCGTGGGACCTTTGTGTCACAAAGTATCTGATTTAGGAAAGTCTTACAAGCTCTTGAGATCTTTTAGGTAAGACGCTTCTAGTTTAAATAGTCTATGTTTTGATAGGTTTGGTTAAAAGGGCATCTTTCTGAGACAGCCTGTGTGTTCGATATGAGCGAGCAGATGCACTGCTATTTGGCTTCTTACTCGTGTTCCTCGTCAGTCGCTCTCCTTTGGAATCCAATTTCAATCTACTCTTCTCGACTGTCGTGTGCTCTCAGAGAGTTAGCTCCTGTCAACCCTCGCTCACTCTCGCCCgcgtttggcctctaactctccTGCATTGTAATTGACTCTTGTGCGCTCTCAAATGGTCCAAACTCCTGTCAACCCTCGCTCATTCTCGCCCGCGTTTGGCCTCCCACTCTCCTGCATTGTCATTGACTCTCGTGCGCTCTCAGGTAGTCCAAACTCCTGTCAACCCTCGCTCACTCTCGCCTGCGTTTGGCCTCCAACTCTCCTGCATTGTCATTGACTCTTGTGCGCTATCAAATGGTCCAAACTCCTGTCAACCCTCGCTCACTCTCGCCCGCGTTTGGCCTCCAACTCTCCTGCAGTGTCATTGACTCTTGTGCGCTCTCAAATAGTCCAAACTTCTGTCAACCCTCGCTCATTCTCGCCCGCGTTTGGCCTCCCACTCTCCTGCATTGTCATTGACTCTCGTGCGCTCTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20649 all species →	COG5_C	Conserved oligomeric Golgi complex subunit 5, C-terminal	Repeat	Interproscan
PF10392 all species →	COG5_N	Conserved oligomeric Golgi complex subunit 5, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019465 all species →	Family	Conserved oligomeric Golgi complex subunit 5	Interproscan
IPR048485 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, helical domain	Interproscan
IPR049176 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13228 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_006583-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.