Gene detail

Detailed information of FUN_006692-T1 in Acropora pulchra

Genomic Location: ptg000001l:15655267...15667294
NR annotation: XP_015772363.1, PREDICTED: uncharacterized protein LOC107350637 isoform X6 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_006692-T1

ATGGCGGTTCTTCGTTTAAACGTTGCTGTGTTGTTTTGCGGTTTCTTCGTTGCAGTTGAACCAAGAATATGCCTCTACAATCAGTTCATCCTTGAATCAGAATCAGGAAACGTGACTTGTATGGATTGTTTGCCATGTCCACGTGGATCTGGTTTGTCTCCAGAATGTGGCACAAGACTCAAATACCACAATAGAAAAGTGGTGTGCGAGGCATGCGTACTTGGCAAAACATACTCTGCTCATGAAGATGAAAGCTCCTGTGAACCTTGTGGTACTTGTGCCGAACATCAAACAGTGGTAAAGAACTGTACTTTGTTCTCGGATTCTCAATGCAGTGATACATGTTCTAAGGGGTTTTACTTTGAAAGTCTGACAGGCGACTGTCAGCCCTGCTCCTGGTGCTGCTCGGATCGGAGTAGTCAGGTAAGAAGTGGTTGCAAGGATATGCCATTTTACAAACAGTGTGACGTGAACACAGCCAAGAGGTGCAAACCCAAATGTCAAATTGATCAATATGTTTTTCCTGGTAGCAAGGGTGAGTGGTACTGTGAAAACTGTGATGTTTGCGCTCCAGGGACATCACCTTTTCCTGAGTGTGGTAGTGTGGTTGAAAACACTGAACAAGTTATATGCAAATCCTGCATTGAAGGCTTGACATTCTCAGACAATTATGGAACAAGTCAATGCAAGCCATGCACTAGGTGTTCTGTTGGACAAAAGGAAGTACTTCCCTGTAATCTGACCAATGATAGGGTGTGCAGTGACTGTGATAAAGGGTTTTACAAAGATGTCAATGTCAATTATGGAACAAGTCAATGCAAGCCATGCACTAGGTGTTCTGTTGGACAAAAGGAAGTACTTCCCTGTAATCTGACCAATGATAGGGTGTGCAGTGACTGTGATAAAGGGTTTTACAGAGATGTCAATGTCACGCGTGAGTGTAAACCATGCTCTGCATGTTGTAATGATGACAAAGATGTGCACATTGGAAAATGTGCAGAGCAGAAGATGCCTAAAAATTTCCAGTGTAGTCAAGCCAACAGAGTAGGAAGTGTATGTCAATCTGAAAGTAACAAAGAACCAAAGTTTAAGTCTCTAGTACCTGTCTTTATAGCAACCAGTGTGACTGCTGGATTTGTCATTGTACTATTAGTATCAATGTACTACTGCAGGTTAAAATTCCGCAGACACAAGACCATCACATCACATCAATCACTCGCCTTGTTACTTGCTGGTGAAGAAGAAAGTAGTGACACTAGATTTGAAGACCCAACTGTGAGTGGCTTGCAGGAGACTTTACGTTTTGAAAAAGCTGGTATCAATCTCCAATTTAGCGACCCTGAAAGCTTTGTTAACGACGGTCAAGGAATCAGATCAAAAATATGTTGGGATAAAGCATTGAGTGTTTCATTACCAAGTCATGAAATTCAGCTCAGTCCTGTAGTCCAATTTTACCCTCATGGCTCAAAACTGTCCAAGCCAGTCCATGCAACAATTCCACACAGTGCATTGATGGATTCTAGTCACGGATGGAGCATTGGACTGAAAAGCTTCACGTTAAAAGGTGGACCAAAGATTGGTTGGAAAGAGGAGGTAGTGGACAAAATCCATGATAATGAAGTGAGCTTTTATATGGATTGTCTTCTCTCCTATGTCGTTGTGGGGACACCAGTTTACAAGTCCTCAAAGGGTACAAAGAAACGTTTTCAGTGCGCAGTCTTTGGAGACAAAGAAGGCAAAGTTGGTCAAGACTATACTGTATATTTATACTTGATCGATGACTGCGAAGCTTCATTAGAGAAACTAACGCAAGATGAAAGATCTAAAGGCATGACTCTGCTGGGTTCTCCTCAGTCAATCTATGTTGAGGCTGGTTTTGAGACTGATGTGAAAATAGCAATCAAACAACTTTGTGGTGGTTGGAAAATCGCGCCCACAAATCCTCAGGTTATAACTCACAAGAGTATAAAGGAATCCTACAGGAAATTTCCATGTGCAGAGATACTATTTCAGCATGATGGTGAACGAAATAGAGACTTTCGCTGTACCATTGAACTGACAGCAGATGACACAACAATCCAAATCTACGCAATCACTTCAATTAAAGAGGACCCATTTCTGAGGTACAAGGAGAGTCGCACAGGCCAACAACACGAGATGGTTACTGGGCGGGGTAAATGTGATCCCACCATTAGCAACAGTGAGAAGTCATTGCTTCATTTATGTGAACTTCCGGAGGATGTAATGCATACTGTAATTGAAAAGCTGAACCAATCACTCCAACATTCAAGCAACTGGCAACAACTTGCAGAAAGGCTTGGTATCACAAAGAAGCATGTTGAACATTTTCCTGGTAGGAACCCTAGTGAGCAGTTACTTCAATACCTTCAGACAAAGAGACCGCACATCACTGTCAGAGAATTTGCACAGGTTCTCCAAGACACTGGACACTCTGATGCTGTTGAATCCCTGAGGTCCTTTGCATCAAGCATGACTTGA

Transcript

FUN_006692-T1

AGTCGCAAGGAACTTCCACAGTGCCCGGATTAGGGTTGTCTAGGCACGGTAATTTGCTAGCTATGTGACGAAATTTTCAGAGAAAGTCAGTTTAATTAATTTATTCCGTTAAAAAACATGCACAAAGTGATGCAACACTGTGAATATTTTCGCAGTGCTATGATAATGAAGTGCTCTCGATCAGTTGATTTTATTTCTTTACGTTGAATTCAGCTCGGATACTGATCTTAACAAAAGAATAAAAAGAAATCTTTGCAGGCACATTCCTTACGCATGACATCAACGCCAATAGAAGACTGTTAGACTAATTTTTCCCTCTGTTTTATAGGTATGACGAATCGAAGAAACTGAGTGAGACATGGCGGTTCTTCGTTTAAACGTTGCTGTGTTGTTTTGCGGTTTCTTCGTTGCAGTTGAACCAAGAATATGCCTCTACAATCAGTTCATCCTTGAATCAGAATCAGGAAACGTGACTTGTATGGATTGTTTGCCATGTCCACGTGGATCTGGTTTGTCTCCAGAATGTGGCACAAGACTCAAATACCACAATAGAAAAGTGGTGTGCGAGGCATGCGTACTTGGCAAAACATACTCTGCTCATGAAGATGAAAGCTCCTGTGAACCTTGTGGTACTTGTGCCGAACATCAAACAGTGGTAAAGAACTGTACTTTGTTCTCGGATTCTCAATGCAGTGATACATGTTCTAAGGGGTTTTACTTTGAAAGTCTGACAGGCGACTGTCAGCCCTGCTCCTGGTGCTGCTCGGATCGGAGTAGTCAGGTAAGAAGTGGTTGCAAGGATATGCCATTTTACAAACAGTGTGACGTGAACACAGCCAAGAGGTGCAAACCCAAATGTCAAATTGATCAATATGTTTTTCCTGGTAGCAAGGGTGAGTGGTACTGTGAAAACTGTGATGTTTGCGCTCCAGGGACATCACCTTTTCCTGAGTGTGGTAGTGTGGTTGAAAACACTGAACAAGTTATATGCAAATCCTGCATTGAAGGCTTGACATTCTCAGACAATTATGGAACAAGTCAATGCAAGCCATGCACTAGGTGTTCTGTTGGACAAAAGGAAGTACTTCCCTGTAATCTGACCAATGATAGGGTGTGCAGTGACTGTGATAAAGGGTTTTACAAAGATGTCAATGTCAATTATGGAACAAGTCAATGCAAGCCATGCACTAGGTGTTCTGTTGGACAAAAGGAAGTACTTCCCTGTAATCTGACCAATGATAGGGTGTGCAGTGACTGTGATAAAGGGTTTTACAGAGATGTCAATGTCACGCGTGAGTGTAAACCATGCTCTGCATGTTGTAATGATGACAAAGATGTGCACATTGGAAAATGTGCAGAGCAGAAGATGCCTAAAAATTTCCAGTGTAGTCAAGCCAACAGAGTAGGAAGTGTATGTCAATCTGAAAGTAACAAAGAACCAAAGTTTAAGTCTCTAGTACCTGTCTTTATAGCAACCAGTGTGACTGCTGGATTTGTCATTGTACTATTAGTATCAATGTACTACTGCAGGTTAAAATTCCGCAGACACAAGACCATCACATCACATCAATCACTCGCCTTGTTACTTGCTGGTGAAGAAGAAAGTAGTGACACTAGATTTGAAGACCCAACTGTGAGTGGCTTGCAGGAGACTTTACGTTTTGAAAAAGCTGGTATCAATCTCCAATTTAGCGACCCTGAAAGCTTTGTTAACGACGGTCAAGGAATCAGATCAAAAATATGTTGGGATAAAGCATTGAGTGTTTCATTACCAAGTCATGAAATTCAGCTCAGTCCTGTAGTCCAATTTTACCCTCATGGCTCAAAACTGTCCAAGCCAGTCCATGCAACAATTCCACACAGTGCATTGATGGATTCTAGTCACGGATGGAGCATTGGACTGAAAAGCTTCACGTTAAAAGGTGGACCAAAGATTGGTTGGAAAGAGGAGGTAGTGGACAAAATCCATGATAATGAAGTGAGCTTTTATATGGATTGTCTTCTCTCCTATGTCGTTGTGGGGACACCAGTTTACAAGTCCTCAAAGGGTACAAAGAAACGTTTTCAGTGCGCAGTCTTTGGAGACAAAGAAGGCAAAGTTGGTCAAGACTATACTGTATATTTATACTTGATCGATGACTGCGAAGCTTCATTAGAGAAACTAACGCAAGATGAAAGATCTAAAGGCATGACTCTGCTGGGTTCTCCTCAGTCAATCTATGTTGAGGCTGGTTTTGAGACTGATGTGAAAATAGCAATCAAACAACTTTGTGGTGGTTGGAAAATCGCGCCCACAAATCCTCAGGTTATAACTCACAAGAGTATAAAGGAATCCTACAGGAAATTTCCATGTGCAGAGATACTATTTCAGCATGATGGTGAACGAAATAGAGACTTTCGCTGTACCATTGAACTGACAGCAGATGACACAACAATCCAAATCTACGCAATCACTTCAATTAAAGAGGACCCATTTCTGAGGTACAAGGAGAGTCGCACAGGCCAACAACACGAGATGGTTACTGGGCGGGGTAAATGTGATCCCACCATTAGCAACAGTGAGAAGTCATTGCTTCATTTATGTGAACTTCCGGAGGATGTAATGCATACTGTAATTGAAAAGCTGAACCAATCACTCCAACATTCAAGCAACTGGCAACAACTTGCAGAAAGGCTTGGTATCACAAAGAAGCATGTTGAACATTTTCCTGGTAGGAACCCTAGTGAGCAGTTACTTCAATACCTTCAGACAAAGAGACCGCACATCACTGTCAGAGAATTTGCACAGGTTCTCCAAGACACTGGACACTCTGATGCTGTTGAATCCCTGAGGTCCTTTGCATCAAGCATGACTTGAAGTAGAACTTAATATTGTAGTGAAATTTGAAAATTTTCCATTCTGTGACAGTTTCTTTAAACTAAGCAGACTTTTTCTGTAATTTGGCTCTTCACCCCATCAAGAATCACCTAGGTGCCATATCTGACAGTTTTTCTTTCTTTTTTGCTGTTTTTGTTTATAATAATATTATAATATTAATAGTGCTTTGACACAATGAAGGCTTTTCTAAAAACAAACAAGTAATCACAAAAGGTGTGTTTTTATTAATTCAAATGATTAGAATTCAATATAAGTGGTATCCCCGAACAGCTTTTGATTTCTGTTTATGTCCACACGATGGCCAAGCCAGGCTCAGGCCTAGACTCCTCCCAACATTTAAAGCTTAGCTTGTTTGTTTTTTCAATGCCGAAGCCGAGTATGCCGAAGGAATTTCAACTTTATGGCGTGTTTCGAAGCGATAATCTTGGAAAATCGGATCGAAAGAGCATTTTAAGTTAAAGATGGTGTAAATTCCAATGAAAAAGGTACGAAAAATGACATTTCCCTTTCTTTAGACGTGATAAATGTGAAAAAAGATAGCCACAACTTCTATGTTGGTGTTTCGAAACCTCGATTGTCTGTCGTTGGTTGTTTGTTGCAATACAACTTAAATGGTTGCAATACAACTTAAATGAAACTTCAGACTGCGTTGTTTTTATTTTTTTTCCAAATTCTGCGCTTCGAAATCGGGGGTGCGGCTTATACACGGACGTTTACGGTATTGACGAGTAAATTAATCCACCATTTATTATTTTACAAACCAAAGAGGATTTTCTTAAGATTTGGGTCCTTATAAATTATAGAGCATATCTCATTCACATCTCTTTTTTCTTTTTGTTTTGCCATTTTGCACACTATCACTCTGTCCTAAACACATTGACTTTGATATAGCATAATAATAATAATAATAATAATTATAATAGTAATAATAATATGTTAAGGGAAAGACAAAGCTAGGTCCTTTTGAAAATTATGTAAACTTTAATAGTTTAAGTAGATGAAGGAGCTCTCATAATTATTTTTTCTCTTTGAACAAACTATAGAATTATTAAACTTAGTCACTTTTGAAATTGCAAAAGGAAAGATGTTGCAACCTTGCTCCCAGGGTCTTTTATCACCTCTCATGCTGTTTGGGGTGGGGGATGAAAGACCCTGGGAACACGGTTGACTGAGTGTTCAGGTTTTTCAATTTGTGCATTTGTTCCGACAGGTACAAAACACAGGTCACAGGTCATTGTTTTACCAATACAGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR052302 all species →	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605 all species →	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005035 all species →	Molecular Function	death receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0015026 all species →	Molecular Function	coreceptor activity	Interproscan
GO:0048406 all species →	Molecular Function	nerve growth factor binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_006692-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.