Gene detail

Detailed information of FUN_006802-T1 in Acropora pulchra

Genomic Location: ptg000001l:16816486...16827784
NR annotation: XP_044176427.1, alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_006802-T1

ATGTTCAGAAAACTACGATTACTCGGTTGCGGAACAAAGAAATTAACTTTGTCGGTAGCTCTGATAATAATTTTTGTTATATGGTTGGATTTTTTGTCAATTTACATTTTCACTACAAGTAAAGTTGGATATAATAAGCTTAACAACTACACAGCGGACAAGAATTTACTTGAATCACAAAGAATTGGTGTAACTGGACTAAAGAAAAGTGAGAGGAAAGGTGTAACTGGACTAAAGAAAAGTGAGAGGAAAGGTGTAACTGGACTAAAGAAAAGTGAGACGAAAGAGAACAGATCGGACAGTGAACAACTAGCACTGACATCTTTAGTGAATCTCAGCACAGAACGAGCGAAAACTGCGAGATTACCAACGAAGTACGGAACCCCAACCGCGTGCTACAGCAAAGAGATGCTGAACTCGCCCGCTATAAACAAGCTCGGGAAGTATCCTCAAGATGAAAGGTATCTCACCATTGGAATCTCATCAATCACTCGACCTTCAGGAGAAGTCTACCTTATTGAAACCGTGAAAGGCTTGCTTGACAACTTTCAGGAGGAGGAAATGAAAGACATTCATCTGGTGATATTCTTAGCCGATTTCGAAGAGGCTAAAAAGACAACTCTACTATCACGGCTCTCGTATGAATTTCAGAAATACGTTGACCAGGGCTTTCTTCACGTGATTTTCGCTCCCCAAAATTACTATCCTCCTCTCACGAACATGAAAACAAAATTCGGCGACTCCCAGAAGAGGATTTTTTGGCGATCAAAGCTGGTGGTGGATTTTTCTTTCATCATGTGCTATTGCAGATACTTGTCGAAATACTATCTTCATTTAGAAGATGATGTGATCCCAACACCTAGTCTTTATCCTAAGCTTCTAGACTTCATCGCTTCTCAGAAAAAACCCTGGCCCATGTTAGACGCATCCTTCATGGGTCACGTAGCCAAAGTGTATCGTAACGTTGACCTTGAAAACATCGCAACTTTCTTCTTTCTGCTGTACGACGAAATGCCCATTGATTGGTTGATTGTCAGGTGGCGACAGATCAAATACCACGACAGTTTTATTCTCCCACCTGCTTCCCTTTTTCAGCATATTGGCAACAGTTCGTCGTTTGTCGAAAACAAGTTTTCGTATAAGTCAAAAGAGAAGTATTTTGACCCTTACGATATCAAGTACAGAGGGCTGAACCCGCCGGCAACAATCGACACCTCTATGAAAGCCGAAGAAGGGACGAAGCCCGAGCATGCGTATACTAAAGGCATCGGTGTCTTCAGAGCCAGTGGGGTTAAGAAGGATGACTATGTTACCATTACATTTACCCCCCCAGTTGGTGTGCGCCAAGTTTTTGTGGACACAGGCGCTCTAGAAGCTAATGATGATCGCCTAAAGTCGGGCGTTTTGCAAGCGAGTTACCTTATTAGTGACGAGTCACCTGAGAAATGGACAGAATTTGAGACCGTTGGTGACTTTGAACTTGGCAAGGTGAAGGTTTTGTTGAATTCCGATAGAAAAGTTACGTGTTTAAAGATTTTAGTGTCCGCCACCCAAGACAAGTGGCTGTTTCTTCGAGAGATAGATGTTTGGCGGGCGTGAGAAGTATTTATTTTTCAATTTCAATTAGTTTTTTACCAACTGCTTCATAGAAGCCTAAACTACTTGTCGCCGGCATTATTCTCTGGTGACGCCGTTTTAGCAAGTAAAATGCAACTTCTAACGATAGATTGGCCTCGAAAATACATTTTAACTCGGACCGCATAAGCTTATAGGAATATTGGGTTGGGCAGTTGACGTCTGTGGGGAATGAGGACCGGGAAAATGGGAGGAAACCGGTTTTTAATTATATCCTCTCGGGTTTTGGCCCTCTTTCTCTTCAGACCACGCGTGCTGTGTTTGCTGCGTCCGTGTGGTAGATTTGTGGGAAAAAACAACATATACTCGTGTATGGCATGGTAAAGATATCTGCACTAATCTCATGGAATAGAAAAATTTCTGTATTTATTAGTTATTATTATTTATTTTTCTATTCCGTGGGGTTAGTGCACATATCCGGGAAAGATTAAATGTGAGTAATGAAGGCTCTGGGAAACTCCGGGAAGAACTGGTTCTTAATCGACAGATCAAGGGCTCGACCCACTCGGATTTTTCAGGCTATCGTTGACTAACTGTAAATTAATCGGAATGGCAGATAACACGCACGCGCAGTGACGTTTTGGGTTTTTCCTAGTGTGCTTCTGCTTGAGGCGCAGGCTTGTAAAAACAAAGTTAATGAAGAGGCTAATTATGGTGAAAACCAGGGGATTGTGAGACTAAGAGGGGAGAAAAGAAGTAACAAAATCGTCCAGGAGCCGATGAGCAGGACCTTGCAACTCCCATACTAAGCCTATGTCACGGCATTTTTACAGACTGATCTATTTTTAGTACACCTTTTCTTTTGTAAAAGAAAGGCAGTTCCAGTCAAGTGACGTCAATTAGTGTCTTGTGATTGGTTATGCCACTCCCACGGGAGTCTCATTCAAAGTAGATTCCATCTAAAAATAAATCGGTCTATAAAAACGTCCTAACAGGAATGTAGTGGAGTTGCATGCTCCTACTTATAGGCTCCTGAATCGTCTTGGTTTTATCAGGAGCAAAACACAAACCACGGTGGCAAATATTACAGACAAAGCGTACACTTCTTTGATATTATCATTAGATGTATTTTTTCCTTCATTTTCATTGGCCAAGAGCCCACCACGTGACCTGTAAATAACTGCATACAAATACGTGTTTTGCAGCAAATAATGTTCTGCTCATGCATACGTTATTGAAACCACTCTATTGTTTGAAAATGACGCATCAGTGAGGGTGGTAAAGGGTATTCACGAGGCACAAAATTTGTGACTGGTGATCGGCCCTTTTTTTTCCCATGAAATGTGAAATGGCTAATTTTTTCCTCGTGAATCGTGATTTCCAAACGGCAGCCGTAAGGCGTGATTTTGCAAATAAAATTTTCCGTGAAACGAGAAATAAATGTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBM8	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C OS=Homo sapiens OX=9606 GN=MGAT4C PE=2 SV=2
Q6ITT3	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C OS=Sus scrofa OX=9823 GN=MGAT4C PE=2 SV=1
Q4R4A8	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C OS=Macaca fascicularis OX=9541 GN=MGAT4C PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000494 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04666 all species →	Glyco_transf_54	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006759 all species →	Family	Glycosyl transferase family 54	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12062 all species →	N-ACETYLGLUCOSAMINYLTRANSFERASE VI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13748	MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C	EC:2.4.1.201 EC:2.4.1.145	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.