Detailed information of FUN_006828-T2 in Siderastrea siderea

Genomic Location: contig_5:5649330...5677577
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07522
all species →		DRMBLDNA repair metallo-beta-lactamaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011084
all species →		DomainDNA repair metallo-beta-lactamaseInterproscan
IPR036866
all species →		Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23240
all species →		DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0003684
all species →		Molecular Functiondamaged DNA bindingInterproscan
GO:0006303
all species →		Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0035312
all species →		Molecular Function5'-3' DNA exonuclease activityInterproscan
GO:0036297
all species →		Biological Processinterstrand cross-link repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10887DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C proteinEC:3.1.-.-
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_006828-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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