Gene detail

Detailed information of FUN_006847-T1 in Acropora pulchra

Genomic Location: ptg000001l:17314930...17327153
NR annotation: XP_029181426.2, ras GTPase-activating protein-binding protein 1-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_006847-T1

AGTTTCAGTGCGGTAAAAAGTTTGTTCAATAAGGGTAGAAAATAGCCCGGTTTGCTAATGGAATAGCCCAAAGATCCAGCCATTTTGAACATGAAATTCTTCTGAAGTGTATGTTTTACTGATTCCTCTCCGAAGTTCAGTGAAAGATGGTGACTGTACCATCCCCACAATGTGTCGGGCGTGAATTTGTGCGGCAGTATTACACCCTCCTGAACCAGGAACCTGTCCAGATTCACAGGTTTTACACAAAACAGTCTTGGTTCCTTCATGGAAGAGCTGAGAATGGACCCACTGAACCTCCTGTGATTGGTCAAGAGGCAATCTACACCAAGATCAAGGATCTAAATTTCAATGACTGCCATACAAAAATCAGACAAGTAGACAGCCATTCCACTGTGGGGGGAGGTGTGGTTGTGCAGGTATCTGGGGAGCTGTCAAATGATGGACAGCCCATGAGACGATTCATGCAAACATTTGTCTTGGCACCTGGTGAGGGCCCAAGAAAGTATTACGTTCATAATGACATATTCCGTTATCAGGATGAAGTGTTCTCAGAGGATACCAGTGATGAGCCAGTTGATGGTAATGCAGATTCAGATGGAGAAGAGGAAGTACCTCAGCAGTTGTCTGTGAATAGCTCTGCAGTCAGTAGTTATGACCAATCCAACCAAGATCAGGATGTGGTGCAAGAGATTCCTTCAGAGGATCTGTACTATCCAAATCATGGGCAAACAAATGGACCAGGAGCTTTGATGGATCCAGAGCCCTTGCTGGATGATGTTAATGATGAAGAGTCCCAAGAACTTCAGGAAGTTATCATTGATAAACAGCCGCAGATGCATCCACATGAGGCCATTGCTGAGACAGCTGTCGTGCATCCACAAGGTAATGACGATTTCATCACTGCTCCCAGCAACGGTCAAATCGAAGAGACCCTTTATGAAGGGGAAAATGAAGGACAAGAGCTTGAAGGAGCAGAAAGTGATACCAATGGCAACTTGGACGACACAATTGATGAACCTATTGAACCAGAGAAGCCGAAGACTTGGGCAGCACTTGCAGCATCTCGGGCTCCAACAGCGCAGAAAACAACTACTCCGGTCTCATCCACTCGCCCTGTGCGACAGTCCCCACAGGCCCCCGCTCAGTCAGTTATTCCACCGCCACCAAGACCCCAGGCTGCTCCCGTTCGGCCATCCAAGGAAGCACGCGGGAGCACAGGCAACAGAGAACCCAGGGTGACGGCAAGAAATGCACCCGACAACCATCAGGTGTTCATTGGCAATCTACCAAATGGAGTAAAGGAGGACGAAGTGCGGAGTGTGTTTGCCAAGTATGGAACAATCTTGGAAATAAGGCTCAACCCCAAGAACTTTGGATTCGTCATCTTTAACAGCCCTGAGCCAGTGGAGCAAATTTTGGACAACAGGCCAATCCATATCGGTAATCATGAAATAAACATAGAGCAGAAGAAACCAAGTGGTTCAGTCGGGCGAGGTGGTGGTGGAAATCGTCGAGGTGGCGGAAATGCAGGAGGAGTTGCCCGCGGGAACGCCCGCGGAGGCGGTGGCCAACCAGGCCGAGGAGGATCTAGTGGAACACGAGCAAGCAATCGTGGAGGATTTGGAGGGAACAGCAAAGTGGGAAGCGAAAGCGCGGGGAGTGGATCGAGCGGGCGAACTGGAGGACGCCGCGACAGTGGAGGTCGCGGCGGGAAATTTAAGTAGATCGCGCAAGAGTGAAGATGGAAAGGCGCTGGGTTTATATTTTGTTTTGTTTTTAACTTACCGTCATAACGAACAAGAGACTCAAACGGAAGAACATCCTCGGTTCCCCTTATTTGCTTCTTAACTTCCTTCCATTGTATTGCCTTCTATTTGCATTCAGCAATCCTTGGCGACTTACTAATTAGCATTTCGTCTGCTGGCCGGCGGATGTGTTCGTTTCCTAAATGTTGTGATTGTATTGATGTTCGTAAGTAGTGCCCGTACTTCGTTGAAGCTCAGTGTCCCGTTGCAGAACATTTCCTCCGAATCAGGTTAAAAATGCGACAAAGCAAGATTCCGCCATCGTTTGTGAACACATCCATCCTCTTTGCCTCCGTGCAGCGAAAGTCGTCAAACTTAATTACGAGGATAGATCTTCAGATTTAAACAAAATTGTGAACTTTTTTAGAATAGGAAACATCCAAAGTTACATGGAAATATGTTTGCGATATTTATATTGGATTCACTAAGAATAAATACGAGCTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LC7	Ras GTPase-activating protein-binding protein 1 OS=Bos taurus OX=9913 GN=G3BP1 PE=2 SV=1
P97855	Ras GTPase-activating protein-binding protein 1 OS=Mus musculus OX=10090 GN=G3bp1 PE=1 SV=1
Q13283	Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens OX=9606 GN=G3BP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02136 all species →	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR039539 all species →	Family	Ras GTPase-activating protein-binding protein	Interproscan
IPR002075 all species →	Domain	Nuclear transport factor 2 domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10693 all species →	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24983	G3BP2; Ras GTPase-activating protein-binding protein 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.