Gene detail

Detailed information of FUN_006852-T2 in Acropora pulchra

Genomic Location: ptg000001l:17401476...17407459
NR annotation: XP_015778539.1, PREDICTED: transcription factor IIIA-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_006852-T2

CTGTCGTGTATGATTACGCTCCATAATAATTCCCCATACATAACGTACCTACCTAACATAACAGAGGGAAAATGGCCGCCCAACAAATACATGTGTGCGACTTCCGAGGTTGCGGGAAAACATTTGCAAAACAAATTAGGCTTACAGAGCACAAGCGGATGCACACAGGCGAGCGACCATGTGTATGCCCCCATGAAGGCTGCAAGAAATCATTTGTGAGATGTTTTCATCTCAAAAGACATTTGCTGTCCCATGAAGGAGAGAAACAATTCAAGTGCCACCAGTGTGACTTGTCATTTCTAACCAAGCACAATTATAAACGACATCAGCAGCGTGCCCACGATCGGCCATTTAAGTGTCCCTTTGAAGGCTGCAATGTTGAATTTATGAGATGCAATAAACTTAAATTACATCAGTTTGTTCACACAAGTGAAAAGCCTTTCAGGGCATTCTTCAGTGAAGTACTTTAAATCTAAAGGCTGTAAAAGTGTTACAGTGTTATTATCGTACTTAGATGCACAGAGAGGGGCTGTCAAGCTTCTTTTGATGCTCCAAGGAAACTTAAACGGCACCAGAAAAGGCACGATGAAGGTGCAGACCAATATTTTCCAAGGTGCAGAGATGATCGCTTCGCCCATGAGTGGCTTCGCAAACATATATCATCACATAATTGTGCCTTATTCTGTGAGGCTTAAGGAGTTGCAGTCTTTGCAATGATCCTGTTGGTTTTTACTAGCTACTGAGGTTGATGAAATTCTGTTAATTCATGGTTAATTCACGTATGACTTTGAGTACTTTAAACACATGTATGCGTCCAGGTGCACAGTGGTTTTGAAGGGTGGCAAAGTATGCTGGTTTATCCTTTTAACTTGGTCATCACCTTTGCCCAGAAATTCAAGCAATTATTGTACAGCGCTTCACCTTCAAGATTCATTAAGAACATAGACTGCTAGCAGTCCCTTTAACAAATAGATTCCATGTTGCCGTGCGTCTGTTCAGTAATAGATAATAGATGACGTCAAAATGTGGTAAGAACAAAAAAGTGGCACACGAGGCGCAGCCGAGTGTGTCACTGATGTTCTTACCACATTTTGACGTCCTCTGTGATCTATTACTGAACAGACGCACGGCAACATGGAATCTATTTGTTTTATATAATAAAAAAATTATAATACACGGAAAAAATGCCCTTTTAATTCAAATTTCGCCACTTTGACAGACACGAAAATAGCACTGACGTGATCTTATGTCTATAAAAAACGAAGCGAACTGATTGGTCGCTATGCTTAGCAAAGAATTGTGATTGGTTCAAATTCAAAATTCAAAAAATTCAAAACAACTTGAATCGAGCGCTGTCGTCATCTGTGCGTCTGTCCTCTAATAGATCATAGGTAAGAACCAATCAAAATGAGAGAATAACTTGGGTTATTATATAATTCTAGATAGTCGCGACAGCGTGCGAGCCGAGAGTGCACAGCGCGTCGAGAAGAGACTGGGAGAGGCCCCACGCCCCCTCCGCTCGTTCGCTCCAGTTTTCCGCTTTCGCCCGGCCATTTCGTGCGCCCTCGCTACTAGCGACCTTCAGATTGCAGTACGAGGACGACTACAAGTACGAATTTTCCGTACTGAGCACGCTTTAGGTTTGGAGGGCGAAAAATTTCGAAGTGCGCGTGCTCAGAACTTAAAACTCGTACCCGTAGTCGTCCTTGTACTCCAATCTGAAGATCGCTACTATCTAGAAAGGGACTGCCAGCAGTCTATTAAGAACACTTTGTTTGCGATAGTACAAGACAACTGAACTCCTCTTTTACGTTTTTATTACAACTTTCGTCATTTAAGACACATGAAACAACCACATTCGTAACATCGCTCTTTCTTTGAAAGAAAAACAAATCCGAGCTTACAGCCATTAAGTAACTTGCTTCCGAGAAAGCGTCCTAAATCATGTAATGTACATGAAACAAAACTAACCCAACTTTAAAGTAAGATAACTGATGAGACAGCAAGCGCACAATTGTTGTAAATGTTTGTTAAATGACGAGACCAAATCCACCATCATGTGAACGTGAACGAAATAATTGAGAATCCCACTGGTTTGGCCGGTATTCTCCAGGTGCACCTGGATAGTCTTACATGTAGTTCTTTTCGGGGGAATGGTTGACTGAACACGTTTTGGTGTTTGTAAGAGCAGAGTTAGTTACTAACTCTGGTAAGAGACACTTCCCATGGAAGTCTGAAAATAATTTTATTTTTTTCTATATTCTGGAAATTATGTACGTGTGCGGGTGTGTTCTTATTGTAAGATTTTAATAATGTTAATATCTCGATATTTGTAACAGCGTTCTAACTAGAATTTGTTTCATAAATGATTAAAATGTCAACAA

Protein

Uniprot

Gene family

Uniprot term	Description
P34694	Transcription factor IIIA OS=Anaxyrus americanus OX=8389 GN=gtf3a PE=2 SV=1
P34695	Transcription factor IIIA OS=Lithobates pipiens OX=8404 GN=gtf3a PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14003	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031519	Cellular Component	PcG protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09191	GTF3A; general transcription factor IIIA	-	Transcription machinery	ko03021	deepkoala